RNA id: XM_026931903.2


Basic Information

Item Value
RNA id XM_026931903.2
length 2111
RNA type mRNA
GC content 0.39
exon number 8
gene id LOC113537435
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16865228 ~ 16872437 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAAATTCCTCAAATTAGTACTAGAAACACTTCTATGGATATTGATCTTGTTGAAATTTCAAAGAACAACAAAGGATCAGCTGCTGTGGCCTTCATGAGTTACACCAACATGACAAACATCCTAAAACCTACCCTCTTTAAGACAATTACAAGCACAAATAAAACCATGATGTCTACTGTGGTGTCAGCTTCACTTCCCAAAACTGCCAACACCAACCTCACCAAACCAGTCAAAATCACCTTCAAACATATTAATGAGTTAGACCCTGAAGGCATTCTCTCCTGTGTGCACTGGAAGACAGACACATGGCTTGAAGAAGGTTGTAGCATCGTACAGACTAACAGCACTCACACTGTGTGCTCTTGTGATCACCTGTCTACCTTTGCTCTCATCATGCAGACTGACCCATGCAGGAGTGACCGCCTCATGAACGCCCTCTTTGCAGTGGCTATAATAGTGGGACTTGTATTCCTGAGCTTGTCTATACTGACATTCACCTTTTATTCTCGGAACCCTGTGACCAACGCAGCTCTGATAAACCTGTGCATAAACCTTCTGCTGTTTCACCTTCTCAGCCTGATCAAAACTCTTTTCCTGGCCCATATACACCCCCTGcaaCTGCGTGCAGCACTGGCTGGAGTgcagtggttttttttaatgtctgttttCGTGTGGATGTTCATTGAAGCTGTGCTGCTCTACATCTTTGTGAAGAACCTGTCAGAGATCAGATCAAACCCAGGGGAGGTGCTAAGCTGGAAATGGTTAATTGTGATTGGATACCTTATTCCACTGGGAGTACTGGGCATGTCTGGTGTACGCTTTCCTAAGGGTTACATCGATGAAGAATGCTGGCTAAATGAGGATGAAAGCTTGATCTTTATTTTTGCAGGTCCTCTTCTTTTCACTGTTACATTAAACCTGGTCCCctacctcatcatcatcattatcataatcTTCACTCTTAAACACCTGAAGAATGAAGTCTTACAAATAAGTAATAATTTTCAGAAGAATCTGATAATATGCGTGATGCTCAGAAGCCTGACCCAGTTTATCATTCTCGTTTGCTACTGGATACTCCTGTACATCCCCAGCAAGAACGGAGTTTTATATCACGCCTTCCAGTTGCTCAACTCCCAGCAGGGCaccttcatcttcctcatccACTGTCTCTCCAACCAAGAGGTCAGGCAGAAGTACAGAAAAGTTCtgtgtgctttctctctctccaacaATCCAGCAGCAACCTCCAGGAGTGTCAGGGCACAACCTGAAGATTCCCAGGACAACTAATAAAAGGTTATGTCGATATACCGTAATAAAATAACCTGGGCAGTGAGCAAAGATGCTACAGTTGTGTTGTTAGTAAATGggatattttattaaacatgattCTTAAGTAAAGAATGAAATACTCAGAGTTGTAGTGAAATACTGAGTGAAGGGGTGGTGTGaagaagtggagttactgttaccatgccgaagcggattattttcctataacagcatgtccccaaatgatttattactcttataccaaagcaacTGACCTGTAATTGTATTATGaattaataacacattatacCTTTTTTCCCACTTATAGTCAATGCTGTGACTATAAGGAAACTCcacaaaacatgttagttcAGGGTCCTTAGCCTTTTAGGCAAATGACCAGAGATAATAGACATCATGAATTTTCttaaacaacattttgttccaatgtatacaagctatataagCTATATATAAAACTCAATTTTGGCAAAAAAACAATTAGATGCAGGCTCAAAGTAAAACAGCTGAAACCCATAGAATGagtagtgcattttattttatttttactgcctTTGCATTATCTCTCTTGGGTATTTTAGGTAAAGAGATATTTTACTTGTTGGTTTACCTTTTCAAAGAGtctatttttttgctttttgtagtACAAGGCCTATACCATCTTTATATGTCATATTATAGTCATATAGTCATACTGTATACGTACGCTGtatttcttttaagaatgttttAGGGGATAATCAAAATGTCACCTAGCCCATCTATTTGAAGTTAGATGTTTCTTGCAGTTTAATGTTTGAAGAATTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447151 lncRNA downstream 6519 16856779 ~ 16858709 (-) True G377422
TU447084 lncRNA downstream 123239 16621167 ~ 16741989 (-) False slc25a10
TU447085 lncRNA downstream 178744 16645096 ~ 16686484 (-) False slc25a10
TU447074 lncRNA downstream 257681 16606330 ~ 16607547 (-) True G377359
XR_004577292.1 lncRNA downstream 265006 16598913 ~ 16600222 (-) True LOC113547464
TU447172 lncRNA upstream 122961 16995398 ~ 16995649 (-) True G377441
TU447211 lncRNA upstream 160466 17032903 ~ 17052265 (-) True G377474
XR_004577336.1 lncRNA upstream 196099 17068536 ~ 17078161 (-) True LOC117596165
TU447707 lncRNA upstream 369398 17241835 ~ 17253715 (-) True G377847
TU447754 lncRNA upstream 444114 17316551 ~ 17316980 (-) True G377874
XM_026931856.2 mRNA downstream 71507 16788121 ~ 16793721 (-) True LOC113537398
XM_026931887.2 mRNA downstream 122390 16739492 ~ 16742838 (-) True si:dkey-27j5.5
XM_034299945.1 mRNA downstream 164098 16700097 ~ 16701130 (-) True LOC113537431
XM_034300235.1 mRNA downstream 169541 16680493 ~ 16695687 (-) True slc25a10
XM_026931862.2 mRNA downstream 202131 16630624 ~ 16663097 (-) False gcgrb
XM_034299897.1 mRNA upstream 16327 16888764 ~ 16898002 (-) True LOC117596109
XM_034299898.1 mRNA upstream 42976 16915413 ~ 16916826 (-) True LOC117596110
XM_034299899.1 mRNA upstream 44416 16916853 ~ 16920580 (-) True LOC117596111
XM_026931891.2 mRNA upstream 70679 16943116 ~ 16948799 (-) True LOC113537424
XM_026932303.1 mRNA upstream 76376 16948813 ~ 16955184 (-) True LOC113537678
TU447143 other downstream 13565 16845012 ~ 16851663 (-) True G377416
TU447144 other downstream 19626 16845012 ~ 16845602 (-) False G377416
XR_004577334.1 other downstream 389797 16425454 ~ 16475431 (-) False LOC113537389
TU446672 other downstream 700858 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 709747 16152919 ~ 16155481 (-) False zgc:158803
TU447682 other upstream 310295 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 393792 17266229 ~ 17268030 (-) True G377862
TU447860 other upstream 835563 17708000 ~ 17712592 (-) False ubl5
TU447895 other upstream 930823 17803260 ~ 17814445 (-) True G377994
XR_004577358.1 other upstream 1291109 18163546 ~ 18166960 (-) False LOC113524896

Expression Profile