RNA id: XM_026931934.2


Basic Information

Item Value
RNA id XM_026931934.2
length 4881
RNA type mRNA
GC content 0.43
exon number 22
gene id LOC113537465
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5253693 ~ 5268198 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGCGCCGCCGCCGGAGGTCGGTGCGTGTCCGGGTGGAGTGACACGTGTGGCCGGGACGCATTCAGGGGCGCCTGTGTCAAGCCAACGGGAAGTTTTATTtagtgactttatttattttttaactatcTGGATTGAACAGACAATATTTCTCTACTCTATTTAAACCCCAAAGGCGTAAAATGGGACGCGGAGAAGGTCGGGAACAATATGAGCTGGCAGCCACCTCAGAGCAGGGGGGCAAGAAATCCAAGCCCAAGGGCAAGAAGGACAAGGATAAGGATATGGATGAACTTAAAAAGGAAGTGGACTTGGATGATCATAAGCTGAGTCTGGAAGAGCTTAACAGGAAGTATAGCACCGATCTTACCAGGGGATTGACTGCCGCTCGTGCAAAAGAGATTCTTGCACGTGATGGACCCAATGCTCTGACCCCCCCTCCCACAACCCCAGAATGGGTCAAATTCTGCAAACAGCTTTTTGGTGGattctccactcttctgtggATTGGAGCTATTCTTTGTTTCCTGGCATATGGAATTCAGGCAGCTTCAGAAGATGAACCAGCAAATGATAATTTGTACCTGGGTATTGTGTTATCTGCAGTGGTTATGATCACTGGTTGCTTCTCATACTATCAAGAGGCTAAGAGCTCAAAGATCATGGACTCCTTCAAGAATCTTGTTCCTCAGCAAGCCTTGGTCATCCGTGatggtgagaaaatgagcatCAATGCAGAGGATGTGGTTGTTGGAGACCTTGTGGAGGTTAAGGGTGGAGATAGAATTCCTGCTGATCTGCGTATTATTTCTGCCCATGGATGCAAGGTGGACAATTCCTCACTCACTGGTGAATCTGAGCCCCAGACTCGTACTCCAGACTTCTCTAATGAAAATCCTTTGGAAACAAGgaacattgcttttttttcgACCAATTGTGTAGAAGGTACAGCTAGAGGTATTGTCATCAACACTGGTGATCGCACTGTGATGGGCCGTATTGCTACTCTTGCCTCTGGTTTGGAAGTTGGCCGAACCCCCATTTCTATCGAGATTGAGCACTTCATCCACATTATCACTGGTGTGGCTGTCTTCCTTGGAGTGTCCTTCTTTATTCTGTCACTGATTCTTGGATACAGCTGGCTAGAGGCCGTCATTTTCCTCATTGGTATCATTGTTGCAAATGTGCCAGAGGGTCTCTTGGCTACCGTTACTGTGTGTTTGACTTTAACTGCCAAACGTATGGCGAAGAAGAACTGTCTGGTAAAGAATCTTGAAGCTGTAGAAACTCTTGGCTCCACCTCCACTATTTGCTCAGACAAGACAGGAACTCTGACTCAGAATCGTATGACCGTGGCACATATGTGGTTTGACAATCAAATTCATGAAGCAGATACCACAGAGAACCAAAGTGGAACCTCTTTTGACAGAAGCTCTGCCACTTGGGCTGGCCTGGCTCGAATTGCTGGCCTCTGCAACCGTGCAGTCTTCCTTGCAGATCAAGATAATGTTCCAATCCTTAAGAGAGATACAGCTGGTGATGCATCAGAGTCTGCCCTGTTGAAGTGTATTGAGCTTTGCTGTGGTTCAGTGAAAGAGATGAGGGATAAATACACAAAGATCGCAGAGATCCCTTTCAACTCCACCAATAAATACCAGCTGTCAATCCACAAGAACCCCAGTGATGGAGAGACCAAACACCTGCTAGTAATGAAGGGAGCTCCCGAGAGGATTTTGGACCGATGTTCAACTATTATGCTTCAAGGAAAAGAGCAACCACTGGATGATGAGTTGAAGGATGCTTTCCAGAATGCCTACTTAGAATTGGGGGGCCTGGGAGAGCGAGTGCTGGGTTTCTGCCATTACAATCTTCCTGATGATCAGTTCCCTGAGGACTTCCAGTTTGATACAGATGAGGTGAACTTCCCCACTGAGAACCTGTGCTTTGTTGGACTCATGTCCATGATTGATCCTCCTCGTGCTGCAGTACCTGACGCTGTTGGCAAGTGCAGGAGTGCTGGAATCAAGGTTATCATGGTTACAGGAGACCATCCAATCACAGCTAAAGCTATTGCTAAGGGTGTGGGTATCATCTCTGAAGGCAATGAAACTGTGGAAGACATCGCTGCTCGTCTGAACATCCCAATAAACGAGGTCAACCCAAGAGATGCCAAGGCATGTGTGGTTCATGGTGGTGATCTTAAGGACCTGACCCCTGAGCAATTAGATGATGTCTTGAAACACCACACTGAGATTGTGTTTGCCAGAACTTCTCCTCAGCAAAAACTGATTATTGTGGAAGGTTGCCAGCGACAGGGTGCCATTGTGGCTGTGACTGGTGATGGTGTTAATGATTCTCCTGCCCTGAAGAAGGCTGACATTGGAGTAGCAATGGGTATTGCTGGATCTGACGTCTCCAAACAGGCTGCTGATATGATTCTCCTGGATGACAACTTTGCTTCTATTGTTACTGGAGTAGAAGAAGGCCGCCTGATTTTTGACAACTTGAAGAAGTCAATTGCTTACACCCTGACGAGTAATATTCCTGAGATCACaccttttcttctgtttataaTTGCAAACATCCCTCTTCCTCTGGGCACAGTCACCATTCTTTGCATAGACCTTGGTACAGACATGGTCCCTGCAATTTCCTTGGCCTATGAGGCTGCTGAGAGTGACATCATGAAGAGGCAACCCAGAAACCCCAAGACGGACAAGCTGGTTAATGAAAGGCTTATTAGCATGGCCTATGGACAGATTGGTATGATTCAGGCGCTTGCTGGCTTCTTTACTTACTTTGTAATTCTGGCTGAAAATGGATTCTTGCCTTCTACATTGTTGGGTATACGTGTGTTCTGGGATGACAAATATATCAATGATCTGGAAGACAGTTATGGACAGCAATGGACATATGAGCAGAGGAAGATCGTGGAGTTCACATGCCACACTGCATTCTTTATCAGTATTGTAATTGTGCAATGGGCAGATTTGATCATCTGTAAGACCAGGAGGAACTCTGTCTTCCAGCAAGGAATGAAGAACAAAATTCTCATCTTTGGGCTGTTTGAGGAGACTGCTTTGGCAGCTTTCCTCTCCTACTGCCCGGGAATGGATGTTGCCCTTAGAATGTATCCCCTAAAACCAAACTGGTGGTTCTGTGCCTTCCCCTACTCACTTCTTATCTTTATTTATGATGAAATCCGAAAGCTTATCATCCGACGCAGTCCAGGAGgttgggtggagagagagacctATTACTAAAGCATCCTGTCCACATTGCACAAGTTTATTTGCATGGCTGTCTTGCTGCTTGGAATTTAACCTCagtaattcagttttttttatatacacaaaaatCTGTACATCTCTAGGGAATGCTTGACACGAACATGGAGATCATGAACCAAGACATTGCGTGCCTTGTTTCTGAAGCCGGACCAATTTTCTAcgtttttaaaattgaaattgtgATATAAATAAACTCCCAGTCGTTTCCCACATTTGGAtgctttacatttattcatttggcagacactttgTCCAAATAGACCTAAAAATTTATACAGGATACAAGCATAGAGCTGAGCAGTTTGAaggggtcttgctcaagggccttaAAGTGCCCACTGActagatcttttttttgtttgtttgtttgtttgtttttgttactctTCTCTCCTCTTGTGAATTGACTaatctaaaatttaaaaaaaaaaagtagttttacTCAGTACACCCCTATTAGCTCTGCCATCCATTTCTGAAAGTGGGATAAACTAAGTTTATAGGCGTGATTTATAGCTTTAAGGCTTTCATGGTGCAAAATGATCTGTGAGCTTTACAGACCAAGTTGGAGCCATTGAGGTCTGTctttctgtgcttccaactcaGGGGTGGGTTTTAAAGTCTGCTCTTTATATACTTTGGAGGGAAGCATGTTTAAGCCTAAATGACCGTGGCTCCCCAGCATATAAGCAAAAGCTGTTCATGTTTGAAGCTAATTCTGTTAAATTCACATTATGTGATCATGACGTGAATATTTGGAATTCACATACACAAAGGAAATCTTAAGCAGATGGGCTCTGGTACTGTCTAATTTCATTTAATGACACATTTGGCTACAGAGGTCATTTTTGCTTAAGATTTGTTTCCTTTGTGTATGTGAATtaaattagcaaattagctaTTTATTTCCGCGATCTGTTCCACTTAACCAAATATTTCCTCAGTTACTATAAAACTGAGACCAACACTGGTAAGACCATTAACAACTGTATAATTGTCTAGGTTACAGTGTGAGCTACACTCTTTCAGCTGTGCTGTGCTTAATTGATTTACAAATATTTGATAAACCAAATGAAACAGTGGCACGtcaaactttttcttttttcccccaaaagcattttaaaagatcattaagatgaaaaatgtattgcagcacattttattgtttggCACAGTAAGAATACGCATGAACCCAGTTTACTTTTTATGTAGGAGTATGCTTTTGCCTGATATGACAttaagccagaaaaaaaatgtaatttgtattttaaaccATGTATTTAGTGTGCATGATTTTGCATGAATTTTAGAGAATTAAGAattatacaaacaaaacagcaacTGGGTCCAGTGTGAAGTCAGATTATCATGAGGCAGAGGAAGTGCTCTGGGACCAGGTAACGTGTGTACAGTCATCTTTTCTGCCTAATTTAGGCTTTACCACTTTTTGAAACCTTAATAAAATGCAGGAAATATGAGCTTGCCAATCATCTTCTGTTTATGACCTCCTTGATATGTAAGTCATTACTATAAATGCATTCCCTATGTGAATGAAGACTGTTAAATGAATccaataaaaagacaaaaggtTA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0030916 otic vesicle formation biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439284 lncRNA downstream 3597 5249832 ~ 5250096 (-) True G370845
TU439276 lncRNA downstream 13417 5240065 ~ 5240276 (-) True G370837
TU439275 lncRNA downstream 15681 5236722 ~ 5238012 (-) True G370836
XR_003403756.2 lncRNA downstream 62046 5190347 ~ 5191647 (-) True LOC113537335
TU439215 lncRNA downstream 63393 5190075 ~ 5190300 (-) True G370784
TU439294 lncRNA upstream 74557 5342755 ~ 5343080 (-) True G370853
XR_004577333.1 lncRNA upstream 77397 5345595 ~ 5365148 (-) False LOC113537484
XR_003403765.2 lncRNA upstream 89041 5357239 ~ 5365148 (-) True LOC113537484
XR_003403766.1 lncRNA upstream 94720 5362918 ~ 5365148 (-) False LOC113537484
TU439334 lncRNA upstream 120706 5388904 ~ 5394769 (-) True LOC113537294
XM_026932180.2 mRNA downstream 140946 5069360 ~ 5112747 (-) False brat1
XM_026932179.2 mRNA downstream 140946 5069360 ~ 5112747 (-) True brat1
XM_026929095.2 mRNA downstream 626452 4619201 ~ 4627241 (-) True knstrn
XM_026929207.2 mRNA downstream 634885 4596430 ~ 4618808 (-) False cfap221
XM_026931936.2 mRNA upstream 1312 5269510 ~ 5277092 (-) True LOC113537466
XM_026931937.2 mRNA upstream 1312 5269510 ~ 5275402 (-) False LOC113537466
XM_026931939.2 mRNA upstream 20487 5288685 ~ 5298173 (-) False LOC113537467
XM_026931938.2 mRNA upstream 36880 5305078 ~ 5316195 (-) True LOC113537467
XM_026931789.2 mRNA upstream 63722 5331920 ~ 5340521 (-) True LOC113537353
TU439054 other downstream 364312 4843329 ~ 4889381 (-) True G370658
XR_004577360.1 other downstream 728909 4524502 ~ 4524784 (-) True LOC117596183
XR_004577367.1 other downstream 790479 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 792378 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 794270 4459317 ~ 4459423 (-) True LOC117596196
XR_004577341.1 other upstream 266217 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 266217 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 266217 5534415 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other upstream 266217 5534415 ~ 5547031 (-) False LOC113537235
XR_004577339.1 other upstream 266274 5534472 ~ 5547032 (-) False LOC113537235

Expression Profile