RNA id: XM_026931936.2


Basic Information

Item Value
RNA id XM_026931936.2
length 3298
RNA type mRNA
GC content 0.45
exon number 22
gene id LOC113537466
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5269510 ~ 5277092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGGAGTATAAAGGCTGACACACCTGATTTTGAGACACAGAGTCTCTAATGTCTCTCTGAAGAAAATAAGGGGAGAAGTACAAGGGGGGAAATAGTCAGTTTTTGGAAAAGAATGGGGTTAGGAgCAGGGAATGATAGGTACAGGTTGGCGTCAACATCTGACGatgagggaaaaagaaagaaaggaggaaagagagataaaaaagacCTGGAAGAACTGAAGAAAGAAGTGGACTTGGATGATCATAAGTTGACCTTGGAGGAACTTCAGCGTAAATATGGCACTGATCTCAGTCGAGGTTTGTCCAATTACCGTGCAAAGGAGATCCTTGAACGTGATGGACCCAATGCTCTGACACCTCCTCCTACAACCCCAGAATGGGTCAAGTTCTGCAAACAGCTATTTGGTGGCTTTTGTACACTGCTGTGGATTGGAGCTTTCCTTTGCTTTTTGGCTTATACGATACAGGTTTCCACAGAGAGTGAGCCTGTAAATGATAATCTGTACCTGGGTATTGTACTTGCAGCAGTGGTGATGGTCACAGGTTGTTTCTCATATTATCAAGAGGCTAAGAGCTCAAAGATTATGGAATCCTTCAAGAAACTTGTTCCACAGCAAGCTCTGATTATTCGTGATGGTGAGAAGAGGAGCATTAATGCGGAGGATGTGGTTGTTGGTGACCTTGTGGAAATAAAGGGTGGTGATCGAATTCCTGCTGATCTCCGAATTATTTCTGCACAGGGATGCAAGGTGGACAATTCCTCCCTTACTGGTGAATCTGAGCCTCAAAGCCGTACCCCTCAGTTTTCTAATGAAAATCCTTTAGAGACAAAGAATATTGCATTCCTGTCTACAAATTGTGTTGAAGGCTCTGCCACAGGCATTGTGATCAACACAGGTGATCGCACTGTGATGGGTAGAATTGCTATCCTGGCTTCAAGCCTTGAAGTTGGACAGACACCAATCGCCATAGAGATTGAACACTTCATCCACATCATCACTGGTGTAGCATTTTTCCTGGGTGGCACATTCTGCATCTTGTCCCTGATTCTTGGATATGGCTGGTTGGAAGCTGTCATCTTCCTCATAGGGCTCATTGTTGCTAACGTGCCTGAAGGTTTACTTGCCACAGTAACGGTGTGTCTGACTTTAACTGCCAAACGCATGGCGAAGAAGAACTGCCTGGTCAAAAATCTTGAAGCTGTAGAAACCCTTGGCTCCACCTCTACTATTTGCTCAGACAAGACAGGAACTCTGACTCAGAATCGTATGACTGTGGCACATATGTGGTTTGACAACCAGATTCATGAAGCAGATACCACAGAGAACCAAAGTGGAACCTCCTTTGACAGAAGCTCTCCCACTTGGTCTGCCCTGGCTCGTGTAGCTGGCCTCTGCAACCGTGCAGTCTTCCTTGCAGATCAAGCCAATGTTCCTATCCTTAAGAGAGACACCACTGGAGATGCATCAGAGTCTGCTCTATTAAAGTGTATTGAACTCTGCTGTGGCTCAGTGAAGGACATGAGAGACAAGTATGCAAAACTTGCTGAGATCCCTTTCAATTCCACAAACAAATACCAGCTATCAATCCACAAGAACCCCAATTCTTCAGAGACCAAGCATTTGCTAGTGATGAAGGGAGCTCCTGAGAGGATCCTGGACCGATGTTCAACCATTATGATTCAAGGAAAAGAACAGCCCCTGGATGATGAAATGAAGGATGCTTTCCATAGCGTATATTTGAAACTGGGTGGTCTTGGAGAAAGAGTGCTGGGATTCTCCCATTACAGCCTTCCTGATGATCAGTTTCCTGAAGGATTTGCATTTGACTCTGAGACAGTGAATTTTCCTACTGAGAATCTGTGCTTTGTTGGCCTCATGTCTATGATTGATCCTCCTCGTGCTGCTGTGCCTGACGCTGTAGCTAAGTGCAGGAGTGCAGGAATCAAGGTTATTATGGTTACTGGTGATCATCCAATCACAGCTAAAGCCATTGCTAAGGGTGTAGGTATCATCTCTGAAAGCAGCGAGACTGTAGAAGACATCGCTGCTCGTCTGAACATCCCTGTGGAAGAAGTCAACCCCAGAGATGCAAAGGCCTGTGTGGTCCATGGTGGAGATCTAAAGAATATGAGCCCAGAGGAGCTGGATGATGTCTTAATACACCACAGTGAGATTGTGTTTGCCAGAACTTCTCCTCAGCAAAAACTCATTATTGTGGAAGGTTGCCAGCGGCAGGGTGCCATTGTGGCTGTGACTGGTGATGGTGTTAATGATTCTCCTGCTCTGAAGAAGGCTGACATTGGTGTAGCAATGGGTATTGCTGGATCTGACGTCTCCAAACAGGCTGCTGATATGATTCTCCTGGATGATAACTTTGCTTCTATTGTTACTGGAGTTGAAGAAGGCCGACTGATCTTTGACAACTTGAAGAAATCCATTGCATACACACTGACAAGTAAAATCCCTGAGATGTCACCCTTCCTCTTCTTTGTTATTGCGGGCATTCCTCTCGCTCTGGGCACGGTCACTATTTTATGTATTGATCTAGGAACTGATATGGTGCCAGCTATTTCTTTGGCCTATGAAGGTCCTGAGAGTGATATCATGAAGCGGCAGCCCAGAGATGCCAAGACAGACAAATTAGTCAATGAAAGGCTCATCAGTATGGCTTATGGACAAATTGGGATGATGCAAGCAGTTGGAGGGTTCTTCACTTACTTTGTAATCCTTGCTGAGAATGGATTCCTGCCCTTGTTTCTGATTGGACTGCGTGTAAATTGGGATGATCCATATAACAATGAGCTGGAGGACAGCTATGGCCAGCAGTGGacttATGAGCGCAGAAAAATTGTGGAGTACACATGTCACACTGCTTTTTTTGTCAGTATTGTGATTGTACAATGGACTGACCTAATCATCTGTAAGACCAGGACAAACTCACTGATACACCAGGGAATGAAAAATAAAGTCCTTAACTTTGGCCTTATGGAGGAAACAGCTTTGGCTGCATTTCTGTCATACTGTCCAGGCATGGATGTTGCTGTTAGAATGTATCCACTGAAACCATGGTGGTGGTTATGTCCTGTACCTTATTCACTCCTCATCTTCATCTACGACGAGGTCAGAAAATACTACCTTCGGCGGAACCCAGGAGGTTGGCTAGAAAAAGAGACATACTATTAAACCACAGTGACCCCTCTgctatgaacacacacacagtcaatcaTTGTGCAATGctgaaaataaagcatttttatttatacaataaatatCAGACTTCAACTcagaaaaaa

Function

GO:

id name namespace
GO:0006754 ATP biosynthetic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439284 lncRNA downstream 19414 5249832 ~ 5250096 (-) True G370845
TU439276 lncRNA downstream 29234 5240065 ~ 5240276 (-) True G370837
TU439275 lncRNA downstream 31498 5236722 ~ 5238012 (-) True G370836
XR_003403756.2 lncRNA downstream 77863 5190347 ~ 5191647 (-) True LOC113537335
TU439215 lncRNA downstream 79210 5190075 ~ 5190300 (-) True G370784
TU439294 lncRNA upstream 65663 5342755 ~ 5343080 (-) True G370853
XR_004577333.1 lncRNA upstream 68503 5345595 ~ 5365148 (-) False LOC113537484
XR_003403765.2 lncRNA upstream 80147 5357239 ~ 5365148 (-) True LOC113537484
XR_003403766.1 lncRNA upstream 85826 5362918 ~ 5365148 (-) False LOC113537484
TU439334 lncRNA upstream 111812 5388904 ~ 5394769 (-) True LOC113537294
XM_026931934.2 mRNA downstream 1312 5253693 ~ 5268198 (-) True LOC113537465
XM_026931935.1 mRNA downstream 11496 5253693 ~ 5258014 (-) False LOC113537465
XM_026932180.2 mRNA downstream 156763 5069360 ~ 5112747 (-) False brat1
XM_026932179.2 mRNA downstream 156763 5069360 ~ 5112747 (-) True brat1
XM_026929095.2 mRNA downstream 642269 4619201 ~ 4627241 (-) True knstrn
XM_026931939.2 mRNA upstream 11593 5288685 ~ 5298173 (-) False LOC113537467
XM_026931938.2 mRNA upstream 27986 5305078 ~ 5316195 (-) True LOC113537467
XM_026931789.2 mRNA upstream 54828 5331920 ~ 5340521 (-) True LOC113537353
XM_026931790.2 mRNA upstream 54828 5331920 ~ 5340516 (-) False LOC113537353
XM_026931711.2 mRNA upstream 112706 5389798 ~ 5394812 (-) False LOC113537294
TU439054 other downstream 380129 4843329 ~ 4889381 (-) True G370658
XR_004577360.1 other downstream 744726 4524502 ~ 4524784 (-) True LOC117596183
XR_004577367.1 other downstream 806296 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 808195 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 810087 4459317 ~ 4459423 (-) True LOC117596196
XR_004577341.1 other upstream 257323 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 257323 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 257323 5534415 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other upstream 257323 5534415 ~ 5547031 (-) False LOC113537235
XR_004577339.1 other upstream 257380 5534472 ~ 5547032 (-) False LOC113537235

Expression Profile