RNA id: XM_026931947.2


Basic Information

Item Value
RNA id XM_026931947.2
length 4881
RNA type mRNA
GC content 0.42
exon number 20
gene id gk
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8294879 ~ 8319843 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGTGCCGGATTTGAAGCGAGCACTCCCTGCCAGGATTCTCCAATGAATGGCACGATGGCCGCCTCGTCTAATAGGATCATGCTCGGCCCTCTTGTAGCCGCAATCGACCAGGGCACGAGCTCCACTCGCTTCTTGGTATTCAATGCTAAAACTGCAGAACTGCTTAGTCACCATCAAGTCGAGATTCAGCAAAGTTTCCCTAAAGAGggCTGGGTGGAAGAGGACCCAAAAGAGATTCTGCAGTCCGTGTACGAGTGCATGGACCGAACCTGCGAGAAACTGACACAGCTCAACATTGACATCTCCAACATCAAAGCCATTGGTGTGACCAATCAGCGAGAAACCACACTGGTCTGGGACAAAGAAACAGGCGAGCCACTGTACAATGCAGTTGTGTGGCTGGATCTGCGTACACAGTCCACCGTGGAGAGACTCATCAACAACACGCCCGGCAGGAACAAAAATCACCTGAAGCACAAGACCGGTCTTCCCATCAGCACGTACTTCAGTGCAGTGAAGCTACGCTGGTTAATGGACAACGTAGAGGAGGTGCGCAAGGCAGTGgttacacacacagccatgttCGGGACCATCGACTCCTGGCTCATATGGTGCCTAACTGGTGGAAAGAAGGGAGGTGTCCATGTTACAGACGTGACCAATGCAAGCAGGACCATGCTCTTCAATATACACACTATGGACTGGGATCCAGACCTCTGCACCTATTTTGGCATACCAATGGAGATTCTGCCAAAAGTGAGGAGCTCTTCAGAGATCTACGGTTTAATGAAAATCAGTTCTAGTCTGAAATCTGGTCCCCTCACTGGTGTTCCAATATCAGGGTGTTTAGGGGACCAATCTGCCGCTCTCGTGGGACAAATGTGTTTTCAGGACGGCCAGGCCAAAAACACTTACGGGACTGGCTGTTTCCTGCTCAGAAACACAGGAACGAAGCCGGTAATGTCAGATCATGGCCTCTTAACAACAGTAGCGTATAAACTGGGTCGAGACAAGCCAGCCTGCTATGCGTTAGAGGGTTCAGTTGCCATAGCAGGGGCAGTGGTGCGCTGGTTGAAAGATAACCTCGGGATTATCCAAAGTTCTACAGAGCTTGAGAAACTGGCTGCTAGTGTTGGAACGTCGTACGGCTGCTACTTTGTCCCTGCGTTCTCAGGTCTCTACGCCCCCTACTGGGAACCAAGCGCCAGAGGaATCATCTGCGGTTTAACTCAGTTCACTAACAGGAGTCACTTGGCCTTCGCTGCTCTTGAAGCAGTCTGTTTTCAGACACGAGAGATCCTGGATGCGATGAATCAGGACAGTGGGATTCCTCTGACTCAGCTGCAGGTGGATGGAGGCATGACCTCGAACAGACTCCTCATGCAGCTCCAGGCTGATATTCTCTGCATTCCAGTAGtgaAGCCGTCCATGCCGGAGACTACAGCTCTCGGAGCAGCTATGGCAGCAGGGGCAGCAGAGGGCGTCAGTGTGTGGAGTTTGAATCCTGAGGACCTCACTGAGGTCACTTCTGAGAAATTTGAACCCCAGATCAACCCGGAGGAGAGTGAGTTCCGTTATGCTCGCTGGAAGAAGGCCGTCCGGAGAGCCATGAACTGGGAGACTACAGAGCCAATCAGTAATGGAAACGGTTACAAGTAGACTTCTTCAATCCTCTTCGATGTTGAATAATGAGAGAAGAAAGTAGGATTCTAGGTATGTCCTCTAGTGTCCAATCACAATCATGCCGTTCCCCACTGGACATTCCAGCTGTAGCTGCTAAGCTTACAACTTCACTCTCCAGGGAATAGACACCACAGACAACTGAATCATCACTATCTGACCTCTAATCAATGAACAAAGTTTGTTTTTAACTTTTGGTACATGGTTGCCATAGCTTGTGAGTTGTGATATGGCAACTGAAACAATTTCTatgaagaaaatgaacaaaacactttgtgaTATCTGAAGTTGCACAGCACTATTGTACTCGTGAAGAAACAGCTGGCAGCCTACACATCTTCATCTGACCCAAGCTGTTTGCTGTAGCTCCTTGATCTTCTTTCTGTAGATGATGACATTTACCACGTGTACCTCTGTGTATTTGTTGGACTGTGTTGTAAATTCGAACAACTTTTAATTCTGCTGCATCGTATTTATTAACTTTGGTTCAGTCCTCATCTTCATTGTCATATCATGCATTAGAAGGTGCCAATAGTAGTTTTCCACGATATCTCTGAGGAATGGTGCAAGATATGGGAGCACTAACGTACAAATCAAGCCAAGCACTGTATGAAGACTGAACGGTTTCACCTTCATAGGGTTCCGTATGGTTGTTGAACAAAACTGTGCATTACTGTTCCGTTACTGTGAGATGCCCAACCCAATATACTGTGGATCCCAAGGTAGAAAACGCTGAGACTTGGTCAAAACACGTCTTTTAATGTTCCTGTTAGAATGTCAACTATTTCAAAAACACTAGAATTCAGAAAGTCTGTTTTAACAAGACGTCTTGATAGTCGCTATGGTTGAATTTTTGTTATACGCTGATGTCTCCGACCTAGGGACTGTgttttcccataatgcactgtgcaCATACATCACTTTTAATCCTGAGAATATTGACGGAAGCAGCAAGGTGGCTTGCATTGGattcactgtataataaaataatttaatgttgGTTATGTCGTCTGCACCATATAGCTAGAggtcatgtttgttttgtttttgactaATCATGAATTGAGAGTTTAACAATTAAATAGCCAATTATTTTTTGGGTTATTGCATAACTATGAATTAGGCTTCCATAGAGTAAAAAAACGTCATGACATTACCATCTTTGTGATGAGGTATTTGACGAAAAATGCTTGTAGTTTTATTTTGAACAtcaaaatgatgtttaaaatctGTTGTATGGTTAAACGGTACTACGCTTTCCGGTTCAAAGTTACACGTACCAATACAATTATGTAATGAAATatcaatgaaaaatgaatatggAAGTGCTCCTTCCAAAATTGATGCCATCTGTGCCTCTAGTAAATTCAGTTATGCATGTTCATAGGACTGcataacacctacataagcTCTTTGTGAAAACTGATATAAAGCCATAAAGGCAGCTCTTGTCAATTTTCATGTTATGTGACATAGCAGCTGTCTAATGACAGAAGATTGCgttttgacattttttcagGCTGTCTTTTGTTGCTAAAAGTAACTGACTAATGAGACAGATTGGCAAAAATAGATCACTATATAATTTTCCTGAATGGCACAACAAAAGTGCGTTCACCATATCATTGGAAGATTACAAGTTCCAATCCCGATGATGCTACAGCCAACGGTGACTGGGAACCAAGGGAGTAAAATTGGGAGCCATGCTCTCTGGATGGGAGGGGTgatatattctctctctcccctgtcaatcacagcaacactagccaatcatgggtgtctctgagctcatgtatgcagaagagggcagatagcgctttcctctgagtgtgttacgctgccctttgaggcaacatgagcagcagtttggagAGGTGCTTGAAAAGTTTTGTTGAcatcacatgtctcagaggaagcacgtgctGGCCTTCACCCTTCCCGGTTGGTAgttgttgtatgataggggagagctggctggtggacGGGAGCTgacaggtgaccaaattggggagaaaaaaatctacaaagtCAGCTATCATGATGCTCTAATATAACTGTGCCCAGAAAGTGATATAACACAACCTTATGGGTCATTTTGTGTTGTCAACATGACATAATTGACATCACATTGACAAAAGCATTCTTTGTGATGTTATAATGTAGGGTTATGTCAGTTGTTATAAAGTGCTTATGTAGGTATCATTTAGTTCTATGAGTTaacacttttgtgtgtgtttgtgttttaataacTATAGTGATGGTATTAATCGTGCCATTAAATCTATTGCTATGTAACTGTTCCAATGTGGAGTTAAGCCATAGTGCTTAAGTTACTTTGTTGTTAATGAAGAAttcaaattttcattttctttcaattAAGCATTATTGAGGTCAAAAGCCAATGAACTTAAAAGTAGTATATTAGGAACCATAATGCTTTGCACTCCATTTTATACAGAGCCAACCAGTTAGTGGTGTTACCaacatacatttttgtatttttttgtagatttgtAAAAGGGACTTTTTAGACATTTGTGTGTTTAACaagaatttataatatattcatgtgtatttttatttattttttttatgtacttgAATTGACCCATGCACTGTTATAGCACGTATCAGTGGCCAGTGTTACTGAGGTACTTTGTCTCAAATCATGCACAAATTTGCGCACTTTTAGAGCAAGTAGCGTGTTCATATtcagaaaagaaacaaatatacGGTAGTACTATTAGTACTTGCTGTATTATCAATTACAACCTGCTCTACATAGAGCAAGGAGGTAAGGCAGGTTTCAACTTCTCTAAAATAGCGATCCATTGAGCGAGAAAAGTTTAACATTTTGGGGTTTTAAAATTGGTTGTTGCTGTGGAAGCTCTTCTGGTGCAAGTCACTGATATGAAGTGATGTGTCCATGTGATGCTTTGCCATTACCGTTAAGCACTTCAACTTGTTTGATTTAAGATGTTATCGTTCAAAAATGTGCTACATAGTACAAGTGCTTAGTGTACAGTCTAAGAGTATAGTGCACAGTGCAGGATTTGAGAgactttttaagtttttttttttttgcaagaatgtttttgttatgttggtacaaatgtgtattttgtacattttgcttGAAATTCCCTTATATGTAAAAGTTAGCTTTTGCTGCACATTAAAATGGTGGATTTGGTTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441222 lncRNA downstream 27690 8261435 ~ 8267189 (-) True LOC113537489
TU441219 lncRNA downstream 90655 8202768 ~ 8204224 (-) True G372471
TU441040 lncRNA downstream 210340 8082963 ~ 8084539 (-) False cars2
TU441021 lncRNA downstream 278491 8016105 ~ 8016388 (-) True G372307
TU441014 lncRNA downstream 305681 7988950 ~ 7989198 (-) True G372300
TU441285 lncRNA upstream 108761 8428604 ~ 8444065 (-) True G372522
TU441552 lncRNA upstream 455189 8775032 ~ 8788141 (-) True G372742
XR_003403741.2 lncRNA upstream 643742 8963585 ~ 8965621 (-) False LOC113537261
XR_003403742.2 lncRNA upstream 643742 8963585 ~ 8965428 (-) True LOC113537261
TU442113 lncRNA upstream 1439898 9759741 ~ 9759949 (-) True G373288
XM_026931948.2 mRNA downstream 3528 8289161 ~ 8291351 (-) True zgc:64002
XM_026931976.2 mRNA downstream 27607 8264998 ~ 8267272 (-) False LOC113537489
XM_026931961.2 mRNA downstream 72336 8218639 ~ 8222543 (-) True LOC113537479
XM_026931962.2 mRNA downstream 76684 8212903 ~ 8218195 (-) True rab9a
XM_026932222.2 mRNA downstream 137319 8150140 ~ 8157560 (-) True u2af1
XM_026931720.2 mRNA upstream 1025 8320868 ~ 8328976 (-) True timmdc1
XM_026932245.2 mRNA upstream 9807 8329650 ~ 8336868 (-) True poglut1
XM_026932384.2 mRNA upstream 35804 8355647 ~ 8415941 (-) True LOC113537751
XM_034300276.1 mRNA upstream 109719 8429562 ~ 8432438 (-) True LOC113537606
XM_034300277.1 mRNA upstream 109719 8429562 ~ 8430945 (-) False LOC113537606
TU440974 other downstream 378558 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 570084 7718263 ~ 7724795 (-) True G372086
TU440391 other downstream 1226348 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 1226412 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 1931676 6358639 ~ 6363203 (-) False LOC113537742
TU441267 other upstream 1141 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 109768 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 271564 8591407 ~ 8606840 (-) True tsga10
TU442201 other upstream 1559000 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2551441 10871284 ~ 10872546 (-) False lipt1

Expression Profile