RNA id: XM_026931961.2


Basic Information

Item Value
RNA id XM_026931961.2
length 3496
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC113537479
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8218639 ~ 8222543 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGCGCCCTCTAGCGGTGACAGTGCGAATTGTTCGCGGGGAACCACAACAAACATGGCGGCTTGGATTTGATATAAATAGaTGTGACAATGGAGAAAAAGGAAATTACACGTATGGTGATACAAATAGAGAAACTACACAAGGACGGAAATTATGAAGACATTTCATATCTACTAACAGACATTTACAACACCAATGTGACATTAGAGCAGCTTCAGACCACTGACATTGCCAAGAGCATTTATCAGCTTGTCAAGTCATGTCCTGTAGCCAGTGTTCGGAAAAGAGGAAAGGATGTGCTCTCAAAATGGAAGCGTTTGTATGGTTCAATACATGAACCCAAAAATATCAAAGATACAAGTCAGTCGAAAGAATGTGAAGCAGCTGAACAAGATAAAGCAGAAGCAGCCAGACAGGACCTAGATCGAAAAGTGAATGACAGCGAAacaattctgtgcttcaaaGTCGAGGAGAGTTCAACGAGTAATGTGGACCAAGAGTCAAGTGACTCGTCTTCTGTGAGAGATGCTTCATCCAAAGCCAAGACTGTACAAGAAGAAGATTCTTTAAGACTTCCTACAGAAGATTCGAGAACCACCTTAACGGTTCCATCTCTGATTAGCGGCTCCACAAACTCCCCAGTCTTGAGAAACAAGTGTGTGGAACTCCTTATCCAGGCTCTAAACCCAGATCAAACAGATCCTGAGCTGACAAAGCATTTAGCTCACACCATTGAAACACACATAGACTACCTTCATGGCCGCAATCCATGCAAATACAAATCCTGCATAAGAAGCAAGGTGGCCAACTTGAAGAACCCAAAGAACCCTCACCTGCGCCAGGGTCTTCTGAATGGCACGTTGGCTCCGGAGTTGTTTGCCCGGATGTCTGCTCAGGAGATGGCTGGTGATGAGTTGCGCCAGCTCAGGCAGGGCTACACGGCAGCGGGCATCAGCGAGCACCAGCTGCCACAGGGACCGGTGGGGACGGCCACGACAAAGGTGCGATGCCAGCGCTGTGAGGGGATGGACTGCAGGGTGACGCAGATCTCCCGTGGCACACTTTTCCTGCCCTCCTGGGTGAAGAGAGGCAGTGTCGATGAAGAAGCCATGACCTTCATTACTTGTGCGAACTGTGGGGCGCAGTGGTACCATAACCGATGGGTGTGCCTTTGAATTGATTCTGAAGAGATTGGTAATATATATAGGGTCATTAAGACTATGGaatggtggcatggtggtgcagcgggtagtgTAGCCACCTCACAGCACCAGGGACCCTAGTttgattactgtctgtgtagagtatTGTGCATGTTTTCCCTGGGTTCTACAGTTTCCTGCCAGCTCCggtaagtggattggctattctaaattgcaactgaatgtgtgtgtgcatggttcccTGTGATGGACAGGCGTCCAATCCAGGGCGTATTCCTGCCTCAAGCCCAGTGTTCcaaggataggctccggatctacTGCCACCCTGACTCAGTTATGACCCTGATTAGGTCATGttaatttatcatatttatgcTTGTATGAATTTCTACTTGGCCAGTTAATGGGCTATTATTTCATTACTAAATAAGCTGTTGTAGCATAAAGTTAATGTTCTGTACTTTTTgtgatataatatttatatgaacACGTTAAATATTATATTCTTTTACAAACACTTCTGTTAACCACTAACAATTATGATAAAGCCAAGATTTAAAATATGGCTGGACTTTATGTCTTTCAAGCTGTGAATTTTAAATTGTCAACCagaataaagctgttactgaagatgaatgaatgaaagaaaatcacTAATGCAAATTATAGCAGATAGATTTTTTTGCCCTTTACATCTCAagtgcaataaaatatttagtttaaaCAGGAAGGCCACTCTTTTAATTGCAATGTTAATTATGTATAACATCCATCCATGCATAATAAAATGAGAATGCTTCCTGCATTGCTATAGTTACTACTCCTGAAACACAGATTTCCTGTTGAACAGCTGTGAACAGCTGCTTAGAATGTCACTGTCGGTTTTTAGTGCTTATTATAATCAGTTATTCTGGCCGAGTAAGATCCACTGATGAGGAATATAACTTGGCAATTGCTTACCTTTACATattgtaacaaaaaaatgttgaaaatgaatAGGAAGCTTAAATGAAACGGGAGAATCCACACGCTGGGTTTGACAGTATGTTCAACAAAGTTCAATATGCACAGATTGAACATAACTGAAATGTGTGcatatttcacaaaaacagAGACATTTACTGTCTGAAAGTAATTCCatgtgatgtgaatattaacagATTCTGTGCCTGTGATATGTAGTGCTGTATTCTTCTACAGATCTTTCTCATTAGGAGACACTCAGATCAGCACAAGAGTGGACCAGGGCTCATGGAGGAATGATCAGGCCTAAACTCCATCGCCTTCCTGCAGACATGTGACACGAAGTGTGCCACATGTGCAGCGAGCATGTGACTCGGTAATCTGCAGTCTGGGGGCAGTTTTCCCATGATTCTTTGCTGCAGGGAGCTTCATGCTTCAATGCACAGCCATTGTACACTGCAGGCTTGTAGCTTTCCATTTATCTGATATGATGAGTGTCGTTTGTGAGCACTGTGACCCAAATCATTTGTTGTACTGATTGTGGAGAgataaagcattttattaagAGGGCAAAACTTGTGATTGTAGTGAATATAAAATTATGGTATACTTATAGTAATAAAGTGGCActatttgcactttatttagGCCTGTGTTAAGCTTTAATATTTTGTCCTACAGTTTGGGTGGGATGAAAATATGCTAAATAGTGTGGCATATTTTCTATAACCTCTAATTCTGAGggggaagatttttttttttccatggtgTTTTCATGGTGTTCGATGACGCTGAGTCGATTCATTACAAATTTCTTGACaccaaaaaattaaaatagaggACAGGAAATGTACTAAATAAGTTTAAAACACAGTCTTACGACTAACAGTATGCAAGAATAGGGATTTTGACACTCTTACACATTCATGATGCCATTTTAGGTCAGGTAAATTGGACAGTTAAAGCTAGATAAATTATCTTAGCCTCAGTTAagattttttgtttagtttagtgACATTGTTTTATTAGAGGACTTTTGTCGTTGAtttcacattttgcattttgttttccaAAGTAAAATACTGACAGCTTTGGAGTCGACTCATAATTCCAAATGCTACAGTTTGGAGAATCGACTCATAATTCCCAATGCCACAGTTTAGAGAATCGACTCTTTGGAATCGACTGATAATTCCCaatgcaacagtttggaaaATCGACTCTTTGGAGTCAACTCATAATTCCCAATGCAACAGTTTAGAGAATCGACTCATAATTCCCAATGACACAGTTTAGAGAATCGACTCTTTGGAATCGACTCATAATTCCCAATGCCACAGTTTGGAGAATCGACTCTTTGGAGTCAACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441219 lncRNA downstream 14415 8202768 ~ 8204224 (-) True G372471
TU441040 lncRNA downstream 134100 8082963 ~ 8084539 (-) False cars2
TU441021 lncRNA downstream 202251 8016105 ~ 8016388 (-) True G372307
TU441014 lncRNA downstream 229441 7988950 ~ 7989198 (-) True G372300
TU441002 lncRNA downstream 241648 7976777 ~ 7976991 (-) True G372288
TU441222 lncRNA upstream 38892 8261435 ~ 8267189 (-) True LOC113537489
TU441285 lncRNA upstream 206061 8428604 ~ 8444065 (-) True G372522
TU441552 lncRNA upstream 552489 8775032 ~ 8788141 (-) True G372742
XR_003403741.2 lncRNA upstream 741042 8963585 ~ 8965621 (-) False LOC113537261
XR_003403742.2 lncRNA upstream 741042 8963585 ~ 8965428 (-) True LOC113537261
XM_026931962.2 mRNA downstream 444 8212903 ~ 8218195 (-) True rab9a
XM_026932222.2 mRNA downstream 61079 8150140 ~ 8157560 (-) True u2af1
XM_026932402.2 mRNA downstream 70106 8132987 ~ 8148533 (-) True cbsa
XM_026932151.2 mRNA downstream 87456 8127561 ~ 8131183 (-) True cryaa
XM_026931724.2 mRNA downstream 113287 8091366 ~ 8105352 (-) True ankrd10a
XM_026931976.2 mRNA upstream 42455 8264998 ~ 8267272 (-) False LOC113537489
XM_026931948.2 mRNA upstream 66618 8289161 ~ 8291351 (-) True zgc:64002
XM_026931946.2 mRNA upstream 72336 8294879 ~ 8319843 (-) False gk
XM_026931947.2 mRNA upstream 72336 8294879 ~ 8319843 (-) False gk
XM_026931945.2 mRNA upstream 72336 8294879 ~ 8319843 (-) True gk
TU440974 other downstream 302318 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 493844 7718263 ~ 7724795 (-) True G372086
TU440391 other downstream 1150108 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 1150172 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 1855436 6358639 ~ 6363203 (-) False LOC113537742
TU441267 other upstream 98441 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 207068 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 368864 8591407 ~ 8606840 (-) True tsga10
TU442201 other upstream 1656300 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2648741 10871284 ~ 10872546 (-) False lipt1

Expression Profile