RNA id: XM_034300379.1


Basic Information

Item Value
RNA id XM_034300379.1
length 2996
RNA type mRNA
GC content 0.51
exon number 21
gene id dis3
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12093322 ~ 12107492 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCCTGCATCAGGTATGAGTTTAAACTATCTCATCCCAGACACTAATGTAGTCCTGCATCAGATCGACATTCTGGAGGATCCCCTGATCAGGAATGTGATCATCCTGCAGACGGTTTTACAGGAGGTCCGACACAGAAGTGCTCCAGTGTACAAACGGATTAAAGATGCTATCCATGACAAGGagaaacatttttatacattcacTAATGAACATCACAGGGAGACATTTGTTGAAAGGGAGCAGGGTGAGAGCGCCAACGACCGCAATGACCGAGCCATTCGCGTGGCGGCTAAGTGGTACACAGAGCACCTGAGCAAATCACCGAGCGGTTCAGAGCTGAAAGTGGTGCTGCTCACAAACGACCGCGCAAACAAGGAGAAAGCCGAACAGAGCAGCGTGATCGCTTACAAATGTGAGGAGTACATCAGAAGCCTGATTGGCAATCCCGAGCTGGTGGACAGACTGGCACTGACCTCTGATGATCAAAATGAGATCAGTGGCAGTAAAGTACTTTTCCCAGAGCATCTGCCTCTGTCCAAGATTCAGACGGGTATCAAGAGCGGCGCCTTTCTGCAGGGGTCGTTCCGGGCAAACACCGACAACTACCTGGAGGCTACTGTCTTCATCCATGGAGAAGGAGACAAGACCACGGAGgttcTCCTCCAGGGCCTGCAAAACCTGAACCGGGCCGTGCACCAGGACGTTGTGGCTGTGGAGCTCTTCCCCAAAGATCGCTGGGTCGCTCCTTCTTCTGTGGTGCTGCAGGACGATCGGCAGAATGATGaagacacagaggaagaggaggcagAGAAGAAGCTGGAGAGCCCTGTACCGGATACCACTATGCTAAAGCCCACTGGCCGTGTGGTGGGGATTATCAAGAGGAACTGGCGGCCCTTCTGCGGGATGCTCAACCAGTCTCAAATCAAAGAGGCCACCAGGCATCTGTTCACTCCTGCAGACAGAAGAATCCCACGGATCCGCATCGAGACACGTCAGGCCTCCACTTTGATAGGCCAGAGGATCATCGTGGCCATTGACGGCTGGCCGAAGAATTCCAGATATCCCAATGGTCACTTTGTGAGGAACCTGGGAGGGGCAGGTGAtaaggagacagagacagaggttCTGCTTTTAGAGCACGACGTTCCGCACCAGGCTTTCTCACAGGCCGTGCTCAGCTTCTTACCCAAAATGCCCTGGAGTGTCACAGAAGAGGATCTGAAAGTGAGAGCGGATCTGaggcacctgtgtgtgtgcagtgtcgACCCTCCTGGATGCACAGACATTGATGATGCCTTACACTGTCGTGAACTGGACAACGGAAACCTGgagGTCGGTGTCCATATTGCAGACGTGAGCCACTTTATTCGCCCAGGAAACGCGTTAGATCAGGAGGCAGCCAACAGAGGCACCACAGTCTATCTGTGTGGAAAGAGGATTGATATGGTTCCTGAGCTTCTGAGCTCTAATCTCTGCTCTCTGCGCTCCAATGTGGAAAGGTTAGCATTTTCCTGTATTTGGGAAATGAACCACAATGCTGAAATCATAAATACCCGCTTCACCAAGAGTGTCATTAATTCCAAGGCCTCTCTGACATACGCTGAAGCTCAGATGCGAATTGATGACTCCAGCATGAACGACGACGTCACCAAGAGCCTCCGGGGTCTGAACAAGCTGGCCAAGATCTTAAAGGGCCGGCGAATTGAAAAAGGGGCCCTGACGCTGTCCTCTCCTGAAGTGCGGTTCCACATGGACAGTGAGACTCATGACCCTATAGACCTCCAGACTAAAGAGCTAAAAGACACTAACTCCATGGTGGAGGAGTTCATGTTGCTGGCGAACATCTCTGTGGCCCAGAAGATCTATGAGGAGTTCTCTGAGTGTGCTCTTCTCAGGAAACACCCTGCGCCTCCTCCATCCAACTACGACATCCTTATCAAGGCCGCCAAGTCAAAGAATCTAGTGATCCGGACGGATTCTGCCAAGGCTCTGGCTGATTCTCTGAACGAGGCCACTCTGGAGAATTTTCTCTACTTCAACACACTGCTGCGTATCCTAGCCACACGCTGCATGATGCAGGCCGTTTACTTCTGCTCGGGGATGgacagcgacttccaccattaCGGCCTGGCCTCACccatctacacacacttcacctcgCCCATCAGGAGGTACTCTGACATCATAGTGCACCGGCTGCTGGCTGTGGCCATCCACGCTGACAGCACCTACCCCGAGCTCATGGACAAACACAAGCAGTCAGCTCTGTGCAACAACCTCAACTACAGACACAAGATGGCGCAGTATGCCCAGAGAGCCTCAGTGGCCTTCCACACACAGCTCTTCTTCAAGAACAAAGGTATTCTGAACGAAGAAggcttcattttgtttgtaagGAAGAAcgccatcatcatcctcatcccaAAGTTCGGCCTGGAGGGCACGGTGTTCTTCGAGAACAAGGACAAACCGGGACCACGGCTCAGCTTCGACTCTGAGGGCCCCACTCTGACCGTGGCGGATCAGCACACTTTCCACATGTTCGACAAGGTGAAAGTGACCATCAGTCTGGATGCCTCCAACATCCAGCACCAGAAGATCAGGATGGCTCTGTTAGAGCCAGTGATCCCGGGTGTCAGTGTGCCGTTACCAGAACTAGAACCCGAGGCAAAGAAACCCAAACTGGATCGCTGAGACCTCTGACTGCCTTCACCATCTGTGTCTAGTTTCTTATTTTAATGCTCATTTTTAAATCTCTGTAAATATTCTTTTGCTCAGTCGGGTCTAGGAGTTATAATATAGAGACATGGAGCTCTGTATGAATTGTAGGTCAgtttcaggagtgtgtgattggattTCTGGGTGATACATTATTCTGTTTCACTGAACGTCACAAAACTGGCCTTTGGTTCAGGAACAAATGGATTATAAATTTACCGACATTAACAGCAGAACAactgttattaattaaaatgagttttttaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443791 lncRNA downstream 586 12092512 ~ 12092736 (-) True G374727
TU443757 lncRNA downstream 9290 12078891 ~ 12084032 (-) True mzt1
TU443741 lncRNA downstream 128541 11963804 ~ 11964781 (-) True G374680
TU443718 lncRNA downstream 150247 11934534 ~ 11943075 (-) True G374657
TU443528 lncRNA downstream 338207 11752574 ~ 11755115 (-) True G374495
TU443961 lncRNA upstream 52914 12158708 ~ 12158915 (-) True G374885
TU444014 lncRNA upstream 217170 12322964 ~ 12323575 (-) True G374935
TU444048 lncRNA upstream 330978 12436772 ~ 12437220 (-) True G374961
TU444049 lncRNA upstream 331562 12437356 ~ 12437686 (-) True G374962
TU444050 lncRNA upstream 335527 12441321 ~ 12441539 (-) True G374963
XM_026931998.2 mRNA downstream 9273 12079167 ~ 12084049 (-) False mzt1
XM_026931987.2 mRNA downstream 31937 11997011 ~ 12061385 (-) False dachc
XM_026931986.2 mRNA downstream 31937 11997011 ~ 12061385 (-) False dachc
XM_026931985.2 mRNA downstream 31937 11997011 ~ 12061385 (-) True dachc
XM_026931994.2 mRNA downstream 108427 11956736 ~ 11984895 (-) True ubac2
XM_034300196.1 mRNA upstream 27681 12133475 ~ 12164139 (-) False dlx2b
XM_034300195.1 mRNA upstream 27681 12133475 ~ 12164139 (-) True dlx2b
XM_034300194.1 mRNA upstream 27681 12133475 ~ 12162945 (-) False dlx2b
XM_026931997.2 mRNA upstream 27681 12133475 ~ 12137332 (-) False dlx2b
XM_026931977.2 mRNA upstream 86427 12192221 ~ 12215715 (-) True ppp1r9alb
trnar-ucu_14 other downstream 620351 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 1220776 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 2174582 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 3486482 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 3660898 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 1203244 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 1218288 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 1219723 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 1220199 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 1222258 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile