Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034300301.1 |
| length | 1018 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 7 |
| gene id | LOC113537507 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 11399622 ~ 11402573 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0005839 | proteasome core complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02740 | PSMB8, LMP7; 20S proteasome subunit beta 8 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU443231 | lncRNA | downstream | 39201 | 11358843 ~ 11360421 (-) | True | G374230 |
| TU443185 | lncRNA | downstream | 156785 | 11238241 ~ 11242837 (-) | True | G374198 |
| TU443184 | lncRNA | downstream | 156785 | 11238717 ~ 11242837 (-) | False | G374198 |
| TU443180 | lncRNA | downstream | 162191 | 11237062 ~ 11237431 (-) | True | G374196 |
| TU443094 | lncRNA | downstream | 251949 | 11147454 ~ 11147673 (-) | True | G374111 |
| TU443391 | lncRNA | upstream | 191535 | 11593966 ~ 11594981 (-) | True | G374370 |
| TU443394 | lncRNA | upstream | 192761 | 11595192 ~ 11596239 (-) | True | G374371 |
| TU443474 | lncRNA | upstream | 266562 | 11668993 ~ 11669256 (-) | True | G374442 |
| TU443528 | lncRNA | upstream | 350143 | 11752574 ~ 11755115 (-) | True | G374495 |
| TU443718 | lncRNA | upstream | 532103 | 11934534 ~ 11943075 (-) | True | G374657 |
| XM_026931675.2 | mRNA | downstream | 8420 | 11385636 ~ 11391202 (-) | True | psmb12 |
| XM_026931645.2 | mRNA | downstream | 15351 | 11380912 ~ 11384271 (-) | True | psmb9a |
| XM_026932240.2 | mRNA | downstream | 19819 | 11374505 ~ 11379803 (-) | True | LOC113537638 |
| XM_026932111.2 | mRNA | downstream | 29567 | 11361426 ~ 11370055 (-) | True | LOC113537567 |
| XM_034300294.1 | mRNA | downstream | 47241 | 11312765 ~ 11352381 (-) | True | si:ch211-239f4.1 |
| XM_026932358.2 | mRNA | upstream | 1685 | 11404116 ~ 11410114 (-) | True | psmb13a |
| XM_026932139.2 | mRNA | upstream | 32083 | 11434514 ~ 11446094 (-) | False | tspan34 |
| XM_026932140.2 | mRNA | upstream | 32083 | 11434514 ~ 11444936 (-) | True | tspan34 |
| XM_026932090.2 | mRNA | upstream | 45948 | 11448379 ~ 11464622 (-) | False | rab3da |
| XM_026932091.2 | mRNA | upstream | 45948 | 11448379 ~ 11461677 (-) | True | rab3da |
| TU442843 | other | downstream | 527076 | 10871284 ~ 10872546 (-) | False | lipt1 |
| TU442201 | other | downstream | 1480882 | 9878843 ~ 9918740 (-) | True | LOC117596103 |
| XR_004577317.1 | other | downstream | 2792782 | 8591407 ~ 8606840 (-) | True | tsga10 |
| TU441284 | other | downstream | 2967198 | 8429611 ~ 8432424 (-) | False | LOC113537606 |
| TU441267 | other | downstream | 3070596 | 8320984 ~ 8329026 (-) | False | timmdc1 |
| trnar-ucu_14 | other | upstream | 70449 | 11472880 ~ 11472971 (-) | True | trnar-ucu_14 |
| TU444510 | other | upstream | 1906607 | 13309038 ~ 13315296 (-) | False | gyg2 |
| trnar-ucu_15 | other | upstream | 1921651 | 13324082 ~ 13324173 (-) | True | trnar-ucu_15 |
| trnar-ucu_16 | other | upstream | 1923086 | 13325517 ~ 13325608 (-) | True | trnar-ucu_16 |
| trnar-ucu_17 | other | upstream | 1923562 | 13325993 ~ 13326084 (-) | True | trnar-ucu_17 |
