RNA id: XM_034299997.1


Basic Information

Item Value
RNA id XM_034299997.1
length 2957
RNA type mRNA
GC content 0.42
exon number 15
gene id LOC113537509
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6742587 ~ 6770718 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacaccggatccacgccgtctacaataatatcaacaaatcttcgactaaagAATCAGATTGATGACATTCAGTCACAGCAAGAGGCAAAAGTGGAGAAGAGGATCCTGGAGTACATCAGCATGGAAAAACTCGTGTACACCCAGGACCCCATTTTCACCCAGAAGATGGTTGACTTCAGGTTCGTGGAGCAAAGACAGGAGTACGAGTCTGTGTGTTTAGATACTGGAGAGAATGCAACCTCTCCCAACAACTGTGCCGTCTTCGACACCAGAAAGCTAACACCTGAGAAATGGATAATCTACTATGAGATTGTCTACCAGCGTTTGGCAGATTTTGTTCCCATGTTGATCCTGCTGTTTATGCTGAAAGAAGCTGTCGTGATGTTGCGGGCAGAATCCATGGACCTGTGTAATGGGGCTGACGTGTCTAAACTGCTCAGTGAAGACTCTGAGTCAGGACGAAAGAGAACAGAGTTACATCAGCGCATGGAACGACTACGGATGGCCCAGGAGAGGATCACCATTAACATCTGAAATGTtgcattttttcctcttatctaaaaacatacatacacattaattaatatCTTTTATAAAATAGACTAGTTTTAATCTCACGTTTAGAATATTGTGtggaatgcttttttttatcgCAACAGTCTTGACAATTGACATGTTTATTGGAATACAATTGAACAGGACAAAGAATGAATGCCAGTCATGCCTTCAACTTTAATTCTTCAATGTTTACCATATAAATTAGGGGTACTCAACTAAAACTTGTAAATGTCCAGCTACACAAAATTCCTATGTCCaaataagcaactaacatgactgaatgacaACAGCAGTTACCTTTAATGCTTAACCCTTAAtaattagtttatggctataagtAAGTCATCAATTTGAAGTGGTTATTCTTTGTTTCATAATGgcacttcaattcaattcaattttatttatatagcacttttaaaaatggacattgtcacaaagcatctttaTAGATATTTGATATACAGTcatgaggaaaagaaagtacaccctccttcaattttatgtttttattaatcaagGCATAAATAACAAATGTGTTTCGAGATGTCCTTATAATCCTttccagattgatgagcagcaacagttgcttttctgaggtcatggctgatgtcctttcttcttggcaggatgtagacacacacgagtgctccagaacaccaaactgcctaagttctCCATCCACATCCATGATAGAGGAGTGGCATATGGGTTCTGTGTTCTTTCAGTTTATTCACATCTTTTGTGAAATCAAGTAGCTATGATGGAGTGTAAACAAGATAGTTATGAAGACATTGCTTATGCTGGTGAAAAGAGTAAGCCAATGGAGGGGGTCTTCCATAGCCATTTAGAGGAGAGAGTTCGTCCTTATATTGATCTGATTGACTCTTTGAGGCTGATTGGTGTTGAAGAAGATTTGGCTTTGCCAACTATAGCTGTAATTGGAGATCAGAGTTCTGGAAAAAGCTCTGTGCTGGAAGCACTATCTGGAGTGGCATTGCCCAGAGGGAGTGGTATTGTGACAAGGTGTCCACTGGAGCTAAAGCTGAGGAAGATTAAATGTGGTATTCAATGGAAAGCCGTAATATCTTACAAAGAACAGTTCGTTGAGTTTGATGACCCAACACTGGTTGAGGGTTACGTTGAGGCAGCCCAGAATGAGCTGGCTGGAGAAGGCGTTGGAATTTGTGATGAACTCATCACTCTGGAGATCATGGCTCCTGATACATGTGACCTCACACTGATCGATCTCCCTGGGATTGCACGAGTTCCTGTAAAAGGTCAACCTGACGACATTGGACATAAAATCAAAAATCTCTTATGGAAATATATAGAGAAGGATCAAACTATAAATTTGGTCGTAGTCCCATGTAATGTTGACATTGCAACAACAGAAGCTCTGAAAATGGCACAGGAAGTGGATCCTGAAGGAAAAAGGACATTGGctATTCTTACAAAGCCAGACCTTATAGACAGGGGAACAGAGAAGAACATATTGGATGTAATCCAAAATCAGGTCATTCCCTTAAGCAAAGGATATATCATCGTCAAGTGCCGTGGCCAAAAGCAAATTGATGATAAGATCTCTCTGTCTGAGGCCACTCGAGTAGAGAGGGAATTCTTCAGACATCATGAATTCTTCAGTTGCCTGTTGTATGAGGACAAAGCAACTATTCAGTGTCTTTCCACCAAACTGACTCAAGACCTGGTTGATCACATCAAAaaatcatTACCTCTGATCTCAGAGGAGATGAAGAAGCAGCTGTGGAGCTTGAGGAAAGAGCTAAGTCAGTGTGAACCTGGCCCACCACTGGACCCAAAGAAgaggaaaactttttttattgatACCTTGTCAAAATTTAACAATAAGATCAATCGCTTGGCATCTGGCGAAGTGGTCAACAATGACAACTTGTTTGTACTGCTTCGGTCTGAATTCAAAAAGTGGAAGGACCATCTTGACAACACAAAGTCATCATTTCACAAAACGGTCCAGGACGTGGTGAATGAATATGACCTGATGCACAGAGGACGTGAGCTGCCTGGTTTCAGTGACTACAGGGTGTTTGAGATGGTGGTGCAGAAGCTTGTGATCCAGCTAACAGGACCAGCCATTGACACACTTAGGGTCATCAGAGcTCCGCGGTTGCGCTGCGTGCCCTGTTCTCGGGAGGATTACTGTGTCCAGCTGGCTTCCTGGGACTGTCCGTTCTGCTTGTTCAGTTTCTGCAACTTCATTAAAGCCTCGCTTTACTCGCTACTGAATCCGCCTCCGTTTTTGCCGTGACAGAACGAACTGACCAATATTATGGATTCAGCGAGTGCCGTCGGAGTCAACAGTTTTCTCTCGGACACGGCCGCGCGTCTCGACAGGCAGGAGGAACAGATGGTCGCCACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440098 lncRNA downstream 181440 6563849 ~ 6566945 (-) True G371487
TU440057 lncRNA downstream 212381 6529397 ~ 6536004 (-) True G371454
TU439992 lncRNA downstream 385234 6362554 ~ 6363151 (-) False LOC113537742
TU439664 lncRNA downstream 743595 6001838 ~ 6004790 (-) True G371134
TU439665 lncRNA downstream 746772 6001179 ~ 6001613 (-) True G371135
TU440232 lncRNA upstream 37775 6808493 ~ 6815071 (-) True G371595
TU440272 lncRNA upstream 97026 6867744 ~ 6867960 (-) True G371632
TU440266 lncRNA upstream 99854 6870572 ~ 6874420 (-) True pspc1
TU440265 lncRNA upstream 109152 6879870 ~ 6881780 (-) True G371625
TU440274 lncRNA upstream 121048 6891766 ~ 6901343 (-) True G371634
XM_026932210.2 mRNA downstream 15029 6721328 ~ 6733356 (-) True LOC113537618
XM_026932032.2 mRNA downstream 33817 6703434 ~ 6714568 (-) True cep97
XM_026932045.2 mRNA downstream 49354 6691664 ~ 6699031 (-) True nfkbiz
XM_034299930.1 mRNA downstream 72464 6668223 ~ 6675921 (-) True eed
XM_034299998.1 mRNA upstream 1637 6772355 ~ 6779290 (-) True LOC117595692
XM_034300425.1 mRNA upstream 20442 6791160 ~ 6796139 (-) True mxh
XM_026932365.2 mRNA upstream 64709 6835427 ~ 6862103 (-) True arhgap20
XM_026932255.2 mRNA upstream 99848 6870566 ~ 6910546 (-) False pspc1
XM_026932254.2 mRNA upstream 113319 6884037 ~ 6910410 (-) False pspc1
XR_004577329.1 other downstream 385182 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 714992 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 796072 5942429 ~ 5952313 (-) False LOC113537623
XR_004577339.1 other downstream 1201353 5534472 ~ 5547032 (-) False LOC113537235
XR_004577289.1 other upstream 288117 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 288117 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 947545 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 1141748 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 1550266 8320984 ~ 8329026 (-) False timmdc1

Expression Profile