RNA id: XM_026932022.2


Basic Information

Item Value
RNA id XM_026932022.2
length 5992
RNA type mRNA
GC content 0.47
exon number 28
gene id tpp2
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6015726 ~ 6033393 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGCAGCCATTTTGCATTGAGCACTTGTCAGGCTGCTGTTGCTTTAAAAATCCACCCATCCCGACTCACCGGTTGTTCGCGCAGGCTGCTGtagtattgtttttatttcatcctcTCTGGTCGGGTCATGGCTACTCGCTCTGTTGAAGACTCCTTTCCTTTACACGGGCTGCTGCCGAAAAAGGAGACCGGCGCTGCTTCATTCCTGACCAGGTTTCCCGAGTACGATGGACGGGGGGTCCTTATCGCCATTCTGGATACCGGGGTGGACCCGGGGGCGCCGGGCATGCAGACCACGACAGAGGGCAAGCCTAAGATTGTGGACATCATCGATACGACAGGCAGTGGCGATGTCAACATGTCCACAGTGGTGGAGCCGAAAGATGGAGAAGTGCTTGGACTTTCTGGACGCACACTCAAGatCCCTCCTGCCTGGGTGAACCCATCAGGAAAATATCACATCGGTGTTAAAAATGGTTATGAGTTTTTTCCCAAACCTCTCAAAGAGAGGATACAGAAAGAGCGCAAGGAGAAGATGTGGGACCCGGCACACAGAGCAGCTCTAGCCGAGGCCAGTCGCAAGACGGAGGAGTTTGACCTGGCTCACCCCAGCCCCTCACAGATGGAGAAGCTGCAGAAGGAGGAGTTGCAGAGCCACAGTGAGCTGTTGAGCACCATGGAGAAGAAGTACAGCGACCCTGGGCCAGTGTACGACTGCGTGGCTTGGCACGATGGCATCACCTGGAGGGCAGTGGTGGATACTTCAGAGAGTGGAGACCTGGCGTCCTGTACCGTGCTCAGCTCctacagagaaagacaggagtACGCCACGCTAGGAGATGCTGAGATGCTCAATTACTCCATCAACATCTATGATGAGGGGAATACTCTCTGCATTGTCACTAGTGGAGGTGCTCATGGGACTCACGTCGCCAGCATAGCGGCAGGTTACTTCCCCGAGGAGCCAGAGAGAAACGGCGTGGCCCCCGGTGCCCAAGTCTTGGCGCTGAAAATAGGGGATACTCGCCTGAGCACAATGGAGACAGGAACAGGCCTCATCCGAGCGATGATCGAGGTGATTAACTACAAGTGTGACCTTGTGAACTACAGCTATGGGGAGGCCACACACTGGCCAAACTCAGGgagaatCTGTGAAGTAATCAGTGAGGCGGTGCAGAAACATAATGTCATGTATGTGTCGAGCGCTGGGAACAACGGGCCATGTCTGTCCACTGTGGGATGTCCGGGAGGAACCACAAGTAGTGTCATAGGCGTTGGTGCTTATGTCACGCCTGACATGATGGTGGCAGAATATTCCCTGAGGGAGAAGCTGCCTCCTAACCAGTACACGTGGTCCTCAAGGGGTCCCAGTACTGATGGAGCTCTGGGTGTTAGCATCAGTGCGCCGGGGGGAGCCATCGCCTCTGTGCCCAACTGGACTTTGCGTGGCACGCAGTTAATGAACGGCACCTCCATGTCCTCTCCCAACGCCTGTGGAGGCATCGCACTCATACTCTCAGGTCTGAAGCAGAACGGGATACGACCCACAGTTGCAGCTGTGAGACGTGCTTTGGAAAACACAGCCCAGAAAGTGGATGACATTGAAGTGTTTGCGCAGGGTCATGGCATTATTCAGGTGGAAAGGGCGTTTGACTACCTCATGCAACATGCTTCCACTCCCACCAGTAACTTGGGCTTCACAGTCACTGTAGGGAATCAGCGGGGCATCTACCTCAGGGACGCCGTCCACGTCTCCACTCCCTCTGATCACGGAGTTGGCATTGAGCCAGTCTTTCCTGAAAACACTGAAAACTCTGTACGAATCTCGCTGCAGTTGCACCTGGCGCTCACATGCAGCGCGCCGTGGGTGCAGTGCCCCTCTCACCTGGAGCTCATGAACCAGTGCCGTCATGTTAATGTCCGTGTCGACCCACAGGGCCTTCGAGAGGGCCTGCATTATACTGAGCTGTGTGCTTATGATACCTCTGCACCCAGTGCTGGTCCCCTCTTCAGAGTCCCCATAACGGTTATAATCCCCACAAAGGTAACAGAGAGCCAGAATCAGGATGTCTCCTTCACAGACATTCACTTCAGACCAGGCCAGATACGGCGGCATTTTATCACCGTCCCTCAAGGAGCCTCATGGGCAGaGATCACATTAACGTCTCACTCCCCTGATGTCTCCTCCAAGTTTGTCCTCCATGCTGTGCACCTGGTGAAGCAGAGGGCTTACCGAGCTAATGAGTTCTACAAGTTCTCCTCACTGCTGGAGAAGGGCTCGCTCACAGAAGCTTTCCCTGTGCTGCCTGGTCGAACGGTGGAGGTGTGCATCGCTCGTTGGTGGGCCAGTCTTGGTGATGTCATCGTAGACTATACCATTTCCTTCCATGGACTGCAAACGTCTCCCTGTCCTCTTCATATACATGCTGCTGAGGGCATAACCAGTTTTGAGGTGTCATCTCCTATTAGATATGAGGAGGTCTCACCAGCCATCACCCTGAAGAACTGGGTGCAGCCACTTAGgCCAATAAGTTCAAAAACAAAAGCGCTTGGCTCCAGAGACGTCTTGCCCAACAACCGTCAGCTTTATGAAATCGTCCTTACATACAACTTTCACCAGCCTAAAAGTGGAGAGGTGACCCCCAGTTGTCCACTACTGTGTGAGCTGCTATATGAGTCTGAGTTTGACAGCCAGCTCTGGCTCCTCTTTGACCAGAACAAGAGACTCATGGGCTCTGGAGATGCTTATCCTCACCAGTACTCTCTGAAGCTGGAGAAAGGGGACTACACCATCCGGCTGCAGGTTCGCCATGAGCAGCAGAGTGAGTTGGAGCGGCTGAAAGATCTGCCTTTCGTAGTGTCTCATCGCCTCTCCAACACGCTGAGCCTGGACGTGTATGAGACACACCGGGCGGCCCTGCTGGCTAAGAAGAAAGCAAACTCGCTCACTCTCGCACCAGGAGCCTCTCAGCCATTCTACATCACCTCTCTATCAGATGACAAGATACCTAAAGGTACAGGTCCGGGGTGCTACATGACCGGCTCTCTGGTTGTACCGAAGAGCGAGTACGGGAAAAAAGCAGACATCGTGCCAATTTTCTACCACTTGATCTCAGCCCCAAACAAATCAAAGaatggaggaaaagagaaggaCAAGGAtggggagaaagagaaggatgTGAAGGAAGAGTTCTCTGAAGCCCTACGAGACTTGAAGATCCAGTGGATGACCAAGCTGGacaataatacattatatgATGAACTGAAGGAGAACTTTGCAAATTATCTCCCTCTCCATGTCCAACGGCTGCATCAGCTGGATTCAGAGAAGGAGCGTCTGAAGCGATTGCAAGACATCGTGGCAGCAGCAGATATTGTTATCTCTCATATTGACCAGACTGCACTGGCAGTGTATCTCACAATGAAGACAGACCCTCGTCCAGACGCAGCCTCCataaagagTGATATGGAGAAACAGAAGTCGTCACTGCTGGACGCTCTCTGTAGGAAAGGCTGTGCTCTGGCTGATCAGCTCATGCAGCCTCCAGAGCAGGAGGGGGCGAGCGCGAGTGAGGTGGGCAGCTCTGAAGAAGACCCGCATGGAGTGGCTAAAGCTCTGACCGACACTTTCTGGGAGGTCCAAAAGTGGGCTGAGCTCACTGACtctaagGTTCTGTCATTTTCCTACAAACATGCCTTAGCAAGTAAAATGTATGGAAGAGCCTTGAAATACGCTTCTAAAATTGTAGAAGACAAACCCAGCAAAGAAAACTGGAAGAACTGCATTCAGCTGATGAGGTCTCTGGGCTGGATGCACTGCACCACCTACACCGAAAACTGGCTTCCTGTCATGTATCCCTCAGACTACACGCCTTTTTAAAGCAGAGAACACAGGATCTCCCTGTGCAAATGCAGTACCAGATTTTAAAGACTCTTGACGTGGTCCAACGAGGATCCCGTTAagccttttttaaaaactcaatTTCACTCAGAACTGCAGGTTCACATGGGACATAAAGGTCTGCATTTCACTACCGTATCATAATCCTCCAGTCACAGGTTTCTCCGTTACTGTTATGTATGATTGTATATTTTGTGGAAGAGGAGTTATGCATTATTTCATTCTTCATATCTTCTTTCAGTACCTGTAGAGGGAGGAGTTGCTGCTTGGTCGATATTTTTTGAGTTATATATTGTCCCAAATCTACtcatgtagattttttttttttttttttttaaatcatgtggagtgccaatttatttaatttcccaGTAAATGCAGGAGGGAGTAAGAGTACGCCATCCTCTTCTGACTGAACTGTGTCTAAACGTAGAAACCGGGGTCACAatgcacacaattatataaaggcaatataaatatatgtaaacatACTTTTCCCTGatctacagtatatgtacaatgtatgcatgtttttataaagtCTACAGTTGCTTTTGGCGTGAAAGCATACAGCTTTCAGTCACTTATATCAAGAGCAAATTGAACTGGgcttttatactgtataacgGAGTCCATGCCTTGCCTTTTTAAGAGTGAAAGTAGTACaagttttgttgtgtgtgtgcgcaaaatatgtgtatttttaatttatttatttttggatgcATATGCTTACATAGTTTGCCTGGCACACTGGTTCTCTTGCTGTTTTATCAGAGTCACATTTAACAATTTCTACAAATGGCACTGCTATAGcacaccttttttaaaaaagaaaaatcaccgCTGGAATGCGTCGTATTCCATACGTacaaaggaaaactccacctgaatgactgtttataatcAACTGACCACAACTGCGTCAAATAGCAGCATTGCTTTCTGGAACTTGGAAACCAAAGTTTAAGATTGTTCTCTTATTAAACGCCAGAGGAGCAgacaaccactaacttctcatgggaataataaaaatacagcaccagccaACAAACTAGCACCAGAATctctaagcacatcacaaatatttcgctgtaaatatgttttaatgtgcttcatggtggagttttcctttaagttgGTGTAGTATGGATTTGAACATGAAGTTTGAGCTGTGTGTTACGTAGCACAGAGTTGAGCTGCACTATAAAGCCTATGGTTAGTTCTCTAAGTTAAGCTTTCTAACTAATGAATCCAGCTTCATGGTATTAACGCTGTGTGCATTCTTCATCATCATACGGTAAAGCTGCTCATGGCTCCAGCTGTTTTTGGTAACTTCTGAGCGGGGCTTTAATGGTTTAGATGTACGTTTACACGTCGTTTTCCCTGAGAATGTGGTGCTTTACAGCCAGTAATGTGTCAGACTTGCAGCTGTGGTTATGAAATGAAGTGCTCAGTTCCACAATCACTGCTGTGGGTGACCGTTGGCATCTATTGCCAAAAAATGAGACTAAGCTTTCCTTTTTGTTGGTGTGTACTGTACTTATCACCAGAAAATCAGTGTGACAATTTCAGATGATGCCATACATCTCCTAAGgatcatgatatttttattttgttgagtTTATCCTGGCTTGTAAGTATGTGCTAATGGAATTGTTTCCTTCTCCAACTCGGTTTAAATACACgcagttttgtgttttggtctgcaacaatattCAGGGTTACACTGGCATGGACTTTGCCAACATCAGTTTCCTCAACAATGGCCTTAAATCATCCCAATCTTCACACTGTCCACCTTTGAGTGCAGTCACGGGTCTCATATCGCTGTCGCTGTGTCAAAGAGCTTAGGATGTATTAATGGATATCGTGTATTTCTAAAGTTTAAACAAATACTAGTTCAtgccaatattttaaaatgtactatTAATTTGAAGCCTACAGTATGTAGTAGTATCATTTTATAACCATTATACTTCAAAAGATGTGTGGAATGTCACAATGAGTTATTTTgttattacagtaaatgttgGAAATTGTGTGATACGATGAAGATAATTCTGAATAAAACTATTTGAACACCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439664 lncRNA downstream 10936 6001838 ~ 6004790 (-) True G371134
TU439665 lncRNA downstream 14113 6001179 ~ 6001613 (-) True G371135
TU439687 lncRNA downstream 16252 5998848 ~ 5999474 (-) True G371153
TU439686 lncRNA downstream 17567 5998003 ~ 5998159 (-) True G371152
TU439680 lncRNA downstream 20979 5993489 ~ 5994747 (-) True G371147
TU439992 lncRNA upstream 329162 6362554 ~ 6363151 (-) False LOC113537742
TU440057 lncRNA upstream 496005 6529397 ~ 6536004 (-) True G371454
TU440098 lncRNA upstream 530457 6563849 ~ 6566945 (-) True G371487
TU440232 lncRNA upstream 775101 6808493 ~ 6815071 (-) True G371595
TU440272 lncRNA upstream 834352 6867744 ~ 6867960 (-) True G371632
XM_026931773.2 mRNA downstream 31929 5976377 ~ 5983797 (-) True blzf1
XM_034300228.1 mRNA downstream 32152 5976377 ~ 5983574 (-) False blzf1
XM_026932062.2 mRNA downstream 42287 5971040 ~ 5973439 (-) True txnl4b
XM_034300231.1 mRNA downstream 46661 5963752 ~ 5969065 (-) True mrpl16
XM_026932220.2 mRNA downstream 63413 5942039 ~ 5952313 (-) False LOC113537623
XM_026932176.2 mRNA upstream 103115 6136507 ~ 6160962 (-) True LOC113537602
XM_034300227.1 mRNA upstream 128722 6162114 ~ 6190394 (-) True cenpe
XM_026932058.2 mRNA upstream 158236 6191628 ~ 6200180 (-) True grk1a
XM_026931690.2 mRNA upstream 170305 6203697 ~ 6222555 (-) False tfdp1b
XM_026931691.2 mRNA upstream 170305 6203697 ~ 6222555 (-) True tfdp1b
XR_003403780.2 other downstream 63413 5942429 ~ 5952313 (-) False LOC113537623
XR_003403737.2 other downstream 468694 5534415 ~ 5547032 (-) False LOC113537235
XR_004577329.1 other upstream 325247 6358639 ~ 6363203 (-) False LOC113537742
XR_004577289.1 other upstream 1025443 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 1025443 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 1684871 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 1879074 7912466 ~ 7916321 (-) False fam155a

Expression Profile