RNA id: XM_026932069.2


Basic Information

Item Value
RNA id XM_026932069.2
length 3560
RNA type mRNA
GC content 0.40
exon number 12
gene id slc2a15b
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12609053 ~ 12622350 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCACTAGACATTAGACTGTTAGTGCTGCACTCGAGTTTATATGTAGCAAGCTGACAGCACTTGAGGAGATGATGCACGAGTTGGTCATGAgaggtgaaggaggaggagcaggtGCTGCACACAGACTGGTAGGCTCCCTCTGTGAGCCTGAATGCTGTGGAGACGATTACAATAAGCAacgtttctctttttctctgtttggaAATTTGCACATGCATTGCTAAATGGCGGAGGAAGTTTTAACCGAGCCATACGGAAAAATTAGAAAGCATTTAACCTCGACCCTGCTAGCAGCAGCACTGCTCTCGTCTTTTGGCAGCTCCATGCTCTATGGCTATAACCTAGCTGTAGTCAATTCTCCTGCTCAGTATATAAAGGACTTTTATAACCGCACTGCAGTGAGGCGTAATGGGAGCGGTCTGAGCAACGAAAGCATCACAATGCTTTACTCCATTACCGTGTCCATTTTCGCCATTGGTGGACTGGTAGGCTCTCTCACTGTGGGAATGCTAGTCACCAAATTCGGAAGaaGAGGGACATTGGTGAAGAGCACAGTTCTAGTGTTTGTAGCTGGTGGACTCATGGGCTTTAGCAGGCATATTGGCATTCCTGAGATGATCATCATCGGTCGCTTCATCACAGGAATACATTCAGGGATCTCTCTTAGTGTAGTGCCCATGTTCCTGGGAGAAATTGCTCCAAAAAACCTCCGGGGTTTCCTGGGCCTTGTGCCTAGCATCTTCATCTGTATTGGAGTTTTCATTGCTCAAATTCTGGGACTTCATGAAGTCCTGGGAAAGGAAGAGCACTggcctcttttcctctctctggtTGTGATTCCAACCTTTATTCAACTAATGCTATTGCCATGGTTTCCTGAGAGCCCTCGTTACTTGTTGATTGATAAACATAATATTCATGCCACTCTCAAAGCTCTGAGGTGGTACAGAGCAAAAGCTAATATCCAGGCGGAAGTGGAGGAGATGCAGAAGGAACAGCGCTCACTCTCTTCAGTGCAGACCATCTCAGTGTATGAGCTGCTAAGAGACAAAGCCGTACGCTGGCAGGTCATATCAGTCATGGTCATCAACATGGGCATGCAGCTGTCTGGCATTGATGCGATTTGGTTCTATACAAACGCCATCTTCGAGAATGCGGGAATCTCAGTCTCACAGGTTCAGTACACAACAGTTGGCACAGGTGCCATTGAGGTCATTGCTGGACTCATTGGGTGCTTTACTATTGAGCGAGTAGGTCGCAGGCCTCTGATGATTGGCGGATTCAGCTTTATGGGCATTTGCTGTGCAGGCATCACCCTTTCCCTTGTTCTGCAGGCTCACGTGCCCTTCATGCACTATGTCAGTGTGGCCTGTGTGGTGGGCATCATTGCAGGATTCTGCATTGGGCCTGCTGGAGTGCCCTTCCTCATGACAGGTGAGCTGTTTAAGCAGTCTCACCGACCTTCGGCTTACATCATTGGGGGTGCGCTCAACTGGTTATCTAACTTCACTGTCGGATTTGTCTTTCCATTCCTACAGATGTCAGCAGGGGCTTTCTGTTACCTGGTGTTCTTCGGCATTTGTGTGGGCGTGGCAGCCTACGTCTACTTCGTCATCCCTGAGACAAAGAACAAGACATTTGTGGAGATCAGCCAGATGTTCGCTTCGAGGAACAACTGTGAGCTTGAGGGTGAACAGCTTCCAATCACTGAGCATCTTGGCCTAAGGATGAAGAACAGATATGGAGCAATGGAGAAGAAGGGAAAAGAGGACATGTACATGTGGAGTGATGACGAGTGTGTGAGCTGatatagaaatgaaaaacagagtTTTGTTATATTTTCCTCATGTGAGTTATTTGGTGCTGAACAATCTACACATTCTCATGTGAAAATACTATTAACTGAGCAGATCCTGTGAGACCCAtcatactacactgtaccataACAACACCTAGGCCCTGGCATATTCCTCAACAACTTTGGTTGGATAGTTAATCTGAGAAGATACAGGTCATCCCAAAGGCCTTAAGACATCTGAGATAGATTTACTTGGATATGCGAAATAATTCAATGCTTATCTgccattattaatattagttcACTAAAATATAAGGTTGCCTGATCAACAAACTAAATAGGAAAATTTacaatttctatttaaaatcaGGCACATTGATTAACATTTCCAATTTTCCTATTGGAAATAGGAATTCCTATATGCTTAAATTGTCTCAGATAATGACTCATATTCATTAGCTTCCTCACAGTCCTGCAATTTGTAGCTTATTTCATGCTAAACTGCAGGAGATTGTATGTATTATGAACaggtgtttatataaaaaaaaactcaactatGAAACATTAACTAGGCTATGtctatattgaaatatttgtgatatgtTTAGTGATACTGAGGCTTGTTGGTTGGTACTGTAATTTCATTATTCCCATCAGAAGTTAGTCTTGATGTTGCTGATGTCATAGGGGACATTGCTAGTGAAGTTAAAATGTTGTTAAATAGGAGTAAAAATTTAATAGTCAGGTCTCACTGTTTGCTCCTAAAAAGAAAAGTGCAAGAGtttattttctcactcactATTTTCCAGTGACTAAAGGACTAAAatgctgctgcattgctctctttatttaggggctaaatcccactggcaccactttCAGGAGGTAGTCTTACAGCATTGTGCATGATGTATGAAACTGTTAAATAAAGGTAACATAGACCAACATGACTAAATGTCAGctcagaatttaattaaaaaataaatcttttgcacCAATGAAGATCACGTATTGATAAATATTGATATCCAAATCATTTAGTGTGgaattttttcctttaaggatTTGAATGTTTTATCCCTCTACTTAGTAATCTATCAGCAAACCAACGGATTATACCAATATAATTTATAAGCTCACTCAATGCTTTGTATTTGTCTTCTATGCCAAGCACAATTAACCTTTTGTCCTCCAATGTCAATTTAAGTTTTCAGCTTTCCTCTTCTATGCACAAATCCTTGACCCTGTAAAATGTGCATAGTGAATTTTTATGTatggaattttattatttatgaaaagacATGCAACCTGTTGTTCTAGCCTTGTACATTTAACATTGGACATTTTCCTGCCTGTTCATAAAGCCTTACTTGTAAATTGCCAATGGAAGATCTTAAACTGACAGTTGACATTTTATTCTCCTTTTTTATTAGGGAGtactttattgttattttttgaGTACAGTCTGTGGCTACATTGATAGTCTTTGCATCCAGCACAACAAACTTTTAAAGACTTGAAACAATGTATATTCAGGAAATATATAGCATCTCCACTAAtaagtttgctttttttaacagtaatgctttacattaagatTCCCtcaactaacattatttacagcattagATAACATGAACAAATGTCAGCATGAATGAATGGTTGTCAACATTATTAAAGCATAAGTAATATAATACATGTATTAATTGGCCTGCGTTTCAATGTTAACTAAATATACCTGCATATACTAATGTTTATT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444129 lncRNA downstream 23456 12585160 ~ 12585597 (-) True G375028
TU444126 lncRNA downstream 24394 12584445 ~ 12584659 (-) True G375027
TU444111 lncRNA downstream 48228 12560601 ~ 12560825 (-) True G375018
TU444089 lncRNA downstream 82234 12526620 ~ 12526819 (-) True G375001
TU444050 lncRNA downstream 167514 12441321 ~ 12441539 (-) True G374963
TU444162 lncRNA upstream 2781 12625131 ~ 12625619 (-) False LOC113537246
TU444203 lncRNA upstream 73665 12696015 ~ 12697218 (-) True G375097
TU444227 lncRNA upstream 119075 12741425 ~ 12741652 (-) True G375119
TU444229 lncRNA upstream 119970 12742320 ~ 12742520 (-) True G375121
TU444257 lncRNA upstream 210526 12832876 ~ 12833354 (-) True G375141
XM_034300265.1 mRNA downstream 16605 12585726 ~ 12592448 (-) True fgf8b
XM_026932144.2 mRNA downstream 30660 12571039 ~ 12578393 (-) False poll
XM_026932142.2 mRNA downstream 30660 12571039 ~ 12578393 (-) True poll
XM_026932391.2 mRNA downstream 38755 12563004 ~ 12570298 (-) False wbp1lb
XM_026932390.2 mRNA downstream 38756 12563004 ~ 12570297 (-) True wbp1lb
XM_034299957.1 mRNA upstream 2701 12625051 ~ 12630403 (-) True LOC113537246
XM_034299933.1 mRNA upstream 21589 12643939 ~ 12656803 (-) False LOC113537226
XM_034299932.1 mRNA upstream 21593 12643943 ~ 12659493 (-) False LOC113537226
XM_034299931.1 mRNA upstream 21594 12643944 ~ 12656803 (-) True LOC113537226
XM_034299936.1 mRNA upstream 23282 12645632 ~ 12656803 (-) False LOC113537226
trnar-ucu_14 other downstream 1136082 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 1736507 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 2690313 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 4002213 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 4176629 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 686688 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 701732 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 703167 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 703643 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 705702 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile