RNA id: XM_026932090.2


Basic Information

Item Value
RNA id XM_026932090.2
length 3846
RNA type mRNA
GC content 0.39
exon number 5
gene id rab3da
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11448379 ~ 11464622 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCATCACTGGGCGTCAGTAGAGGGTGGAAGGATAAACTGTGTCAAGGTAAAGGCGAATAAAGACATCGATCTGAGAAGTTAGCTTTGTTTTATTAGTggggtttattttattattaaaaaagagCCGTGTTTAATGGAGTTGCAGTAAAAAGGACTGATAGCAGAAAGAGCGCCGGAGCAGAAGAAGCGGATATCCTAAGAGACGGATAAtaagggaggaggaggaggataataataataacttttctTTGGAGCAGAGTGAACTGAGAGCGACTGTACAAGATGGCGTCAGTAAGTGACCCCCGGCAGCAGACACAGGTGCAGAAAGATGCAGCTGACCAGAACTTCGACTACATGTTTAAATTACTTATCATTGGTAACAGCAGCGTAGGAAAGACCAGCTTCCTATTCCGCTACGCAGATGACTCGTTCACCTCGGCGTTCGTCAGCACCGTTGGCATTGACTTCAAAGTCAAAACTGTGTACCGCAATGAGAAACGCATCAAACTCCAGATCTGGGACACTGCAGGTCAGGAGAGATATCGCACCATCACCACGGCCTACTACAGAGGCGCCATGGGCTTCCTGCTCATGTACGACATCACCAACCAGGAGTCTTTCTATGCTGTACAGGACTGGGCAACTCAGATTAAGACATACTCATGGGACAATGCTCAAGTTATTCTGGTTGGAAATAAGTGCGACCTGGAGGACGATAGACTGGTGGCCACGGAAGATGGACAGAGACTAGCTAATGAGTTAGGGTTCCAGTTCTTTGAGGCTAGCGCAAAAGACAACATCAATGTAAAGCAGGTTTTCGAGCGGCTTGTTGACATCATCTGTGACAAGATGAACGAGAGCATGGATGGACAGCCAAGCCCGCTGGCCAATCACAAAGGACCCAGCCTAGAGGACACGCCCCCTACCAGCCAAAATGGCTGCTCATGTTAATGATTGCTCTGttgctctctcgctctttcaaacacacacacatacacgcacacacacaaacgcacattTACGAAATGCACACATGCCTAGCCCAACACAGCCACACTCTACTGATAGACCAAGTAGTAGTAATGCAACAAAGTGTACAATGTAAGTGTATAGtacatgtgtatacacacacatagctgTACACTACAAAAACTGGTATTGACCTGTCACAGTGGTTCTCAACTGGACTTACCTCATGTCCaatatttgtctttttcattAAGTCCTGGGCCAAATGCAACCGTTCAAgccttttaatttctttcacaCAGTGAATACTGCAGTAAAAGGCTGCACCCCTCATGCACtaaaacaggaaacaaactgaaatataaCAAAGTCTAAAAAGCTACATAAACATATAAGATTTAAATATGATCCACAAAGACCAAAACACTGCATTAGTAAAGACtaaagatataataataatatcctaaTGTTCCTATACTACTAcgactactgctactactacaactactactcctactcctactactactactactactactactaataataataatataatcatcaGGTTTTATTAAGCTGTCATTACTATGCATATggagtcataataataatttttgtccTGATAGAATACCTGGGCATTCTCTTTGTTCCTGACATGTAAGCTTAAAGCTAAACAGGACTTAAGCTAAGAAGGCTtcatacttttattttcttattttaaaggTTCAGTCAATGATTTTGGGAGAAATTAGCAAAACTAGGTTTTTGAATTCAAAAGCCACATCCCCTAAGCTAGAACACCTGTAGGCTTTCTAAATTGCCAGGCTACATGACTGACAAGAAAGCTGTCCTGATTAGTTAAATCTTAATGGCCCACATgatttccttctctcttttttatagTCTGGGTGTCCCACAGAGACCTGACTTTCTCCTTCTCAGTATATTCTGAGATATTTTAAATAGAATTCTGACAAAATTCCCAAAATGTTTTCTCTCATTattgtgtcatatttttgtttggAAGCCATGTTGTGAAAAGCTACCAAACTGCTGTGTGCATTTACTGCTATAAGTGTGCTTTTTTATTCCGCTAAATAAACTGTTATTATAGACCTGAGATGAATTTATATCACATCTCGGGTTTAAGatttaaacagaaaacactGGATGTCTTTGAAATTTAAGTAGCACATGTCTGCTTGCAACCCACCAGCTGAGAACCACTGAGCCAACAGAGATCAATTAGTCCCATAATCATACACAATCATACTTCATACATCCATGCAGAGTGTTACACAATGGCAGCATGGCTGTTTTAAGGCTATAGCATCTCAAAAGTAGCAGGGAATTGAAGGTCATGTTCAGATTTCAAAACCAAAGATTCATGTGAATGTATTTTACACCTTGCTGATGTCATGTCAATGGCACAGTGACTGAATGTAGGAAgtgaatgagattttttttccccccaaagtTGTTAGATTTTGCTTTTATCAAATTAGGCCACTGGATCAGATTTTACTTATTGTGATCAGATACAGAATGTCCAGGAAATTTCAGCTTTCTGACATTTCAAAGACTATATTTTAAAGCCGTCCTGCCTCCTTGTGGACACTGAATGTAACCGCTGTGCAGCTCTGTATCAGAGTCCTGAGCTCTATGATCTCAAATCTAGGAGGCTGAAACACACCATGGTTTAATGTTGTTTTGCTCAAGCTCATCTTATTCATGTTATGCTacttattaattaaatgaagaATGAAATTAGGGTATGTTGGCAGGAAGACCAATATAGGGGAAACATGCAAAGCTGTGTGATCTGCTGGAAAACCTTATAAAACTGTCTTGTAGATGCTGTTAGAAATTGTGAATTGTGTTGTGAAATATTCACTGTGTCTCATAAAAGGCTTTTTAATGCAAAGTACCATACTCTTACCTGAAATCAAGAGCCCAATCATATTCCAGTCAACCAAAACATTTTTCCATATTGAATAATGAATTGCCTAAAGtggcactttcacaaaaaagaaTCATTAGAAATGACAAGATCCTGAACTATGAAAAACTACGAAAAAGCAATGGGAAGCTACATTTTTCAATGCAATAACACAACTACAGTAACTTCAAAACCGCTGCATTGGTAATTTTCCCACTTTGACCTGTCTACTCTCTTCCTTGAAAGGATTTAATGGTGAAACAAACACATTAGTGCTACAGagtgtagtcattttttttctgcatttctatGCACTTTGGTTCTCTGTTAAACCTGTTAAATGATCAGTTACTTTGGTTCAGACTTATTTCCGCTGTACTTGATACAGTAAAGTTTACTACACACATGATAAGCAAATTTATTGCACTATATCCTAAAATAACCTTTTATCAGGTTAAAGTGTGTTATGTGCAATACCTGAAATCACATGCTGTTGTTTAGTATGACATGATTCTGAGTCACATTCACTAAGACGTTCTCTGACAGAGCCTCCTCTGCAGTTACAATCTTCTTCCTTAGTGTAACATACTGTTGTTTGGGGATagggaaatgtttttatatcattgTTGCCCACTTTATTTCTCTCATCATGTCAGGTGTGACTCATTTAGAAATTCATGGAAGAATACTAAAAGATCTCTGGGTGACAGAACATGATTCTGTTGACTTATTTACTAAGAAACTGCAGTAATGTTTCAGGTAAATTTCAATTATGGAAAACCTGTAATGTGGCTAAAGGTTATTGAAATGTAGCTCACATAAGATCCGGACTTCGTGAAATATTCTGTACACAAAATGAGGTCAAAATCTGTACAAATCACACATTGATCCAGTATCAGTATATGTACtgtcaaatcaaataaacaacaaacca

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443231 lncRNA downstream 87958 11358843 ~ 11360421 (-) True G374230
TU443185 lncRNA downstream 205542 11238241 ~ 11242837 (-) True G374198
TU443184 lncRNA downstream 205542 11238717 ~ 11242837 (-) False G374198
TU443180 lncRNA downstream 210948 11237062 ~ 11237431 (-) True G374196
TU443094 lncRNA downstream 300706 11147454 ~ 11147673 (-) True G374111
TU443391 lncRNA upstream 129344 11593966 ~ 11594981 (-) True G374370
TU443394 lncRNA upstream 130570 11595192 ~ 11596239 (-) True G374371
TU443474 lncRNA upstream 204371 11668993 ~ 11669256 (-) True G374442
TU443528 lncRNA upstream 287952 11752574 ~ 11755115 (-) True G374495
TU443718 lncRNA upstream 469912 11934534 ~ 11943075 (-) True G374657
XM_026932139.2 mRNA downstream 2285 11434514 ~ 11446094 (-) False tspan34
XM_026932140.2 mRNA downstream 3443 11434514 ~ 11444936 (-) True tspan34
XM_026932358.2 mRNA downstream 38265 11404116 ~ 11410114 (-) True psmb13a
XM_026932009.2 mRNA downstream 45806 11399622 ~ 11402573 (-) False LOC113537507
XM_026932007.2 mRNA downstream 45811 11399622 ~ 11402568 (-) False LOC113537507
XM_026932171.2 mRNA upstream 2782 11467404 ~ 11471543 (-) False pld6
XM_026932175.2 mRNA upstream 2782 11467404 ~ 11471531 (-) False pld6
XM_026932172.2 mRNA upstream 2782 11467404 ~ 11471495 (-) False pld6
XM_034300268.1 mRNA upstream 2782 11467404 ~ 11471387 (-) False pld6
XM_026932174.2 mRNA upstream 2782 11467404 ~ 11471258 (-) False pld6
TU442843 other downstream 575833 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 1529639 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 2841539 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 3015955 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 3119353 8320984 ~ 8329026 (-) False timmdc1
trnar-ucu_14 other upstream 8258 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 1844416 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 1859460 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 1860895 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 1861371 13325993 ~ 13326084 (-) True trnar-ucu_17

Expression Profile