RNA id: XM_026932099.2


Basic Information

Item Value
RNA id XM_026932099.2
length 1906
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC113537557
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17109153 ~ 17118898 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGCGGGTTAGAGAGTATGGGTATACATATTTAGAGATCTCCGCTAAGGACATAAAGACATATTAACTCATGGACTGCTCATCACTGCTGTTACTGTTGTTGCTAAAATTAATTGGAATCCTTTTCCAAGAGATACCAgGGTCTCTGGCTCAGGACTGGAGTGTGTCTTATACACCGAGCAGACTGTGCGCTCTTCATCACTCCTCTGTTGTGTTACCCTGCAAATACACCTACCCCAGCGGTCAAGTGGTCACCAGTTCTGCATGGCATTACAGGAGGTCAAACAGCTCGACGATTGAAAGACGTGTAGCGCATTCTCTAGCCGATGAGTCAAACTGCTCTCTCCTGCTGGACAGCGTGACTCAAGACGATGCTGGTGTTTATCAGTTCAGCTTCAGGACCAGGGACTCCACCCAGGATCTGACAAATGAAGATGGGGTTACGCTGGAAATAACAGATCTCCAGGTGGACATGGAGCCAGTGTCAGACAAGGTGTTGGAGGGAGACTGGGTGATGTTGATCTGTGGCTCCTGCATTCCTTCCCTTACTGTTCCCACCTATACCTGGTACAAAGACGGACGTCAGTACAAGCAAAAACATGGAGACTACCAGTTGGAGCTAACAAACATTAAAGTGGAGGATGAAGGCAGCTACCAGTGCTCCATCAGTGGCCATGAAGGCCTGCTCTCCTCAGCTGTGAAATTCACTGTTAACTATCCTCCAAAGAACGTCTCAGTGTCCATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaatCCACCTGTGGAGATCTACACCTGGTTTAAGGGGAAGACATCAGTAGAAAAAGGAAAGACCTACAACATCTCCAACATCAGCGCTGAGCACAGTGGAGAGTACAAGTGCAAGTGCAGTAATGAAGTCGGACATCAGGACTCCATCGGTGTAACTCTGAATGTTCTGTATCCTCCAAAGAACGTCTCAGTGTCCATCAGCTCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtggCGCTAACCCACTTGTGGAGAACTACACCTGGTTTAAGGGAGAAGCATTAATAGGAAAAGGAAAGACCTACATCATCTCCAAGATCAGCACTGAGGACAGTGGAGAGTATAAGTGCAAGTGCAGTAATGAAGTCAGACATCAGGACTCCATTGGTGTAACTCTGAATGTTCTGTATCCTCCAAAGAAAGTCTCAGTGTCCATCAGCACCTCTGTTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGATCTACACCTGGTTTAAGGAGAAAGAATCATCACCTGTAGGATCCGGAAAGAGTTACAGAGCTCTACAGAGTGGACAGTACTACTGCGAGGCTCAGAATAAACACGGCTCTGAGAGATCAGCTACAGTGTCCGTCACTTTAAGCGGTGGCTCTGTGATTGTGTATGTGGCTGTTGGAGTTGGACTTTTTGGGATTGCAGCTCTTCTCTCTGCACTCTGCTGGCTGAGAAGCAAGAGACAGAAGAACCAGAAAGAAGAATATGAATGCCAGACCGCTGGACTGAGTGCTAAAGACGACACGTACGCAGCTCTCGATCTCACAGACCGGACATCTGATGATGTGTATCACACACTTGCAATTGCTCATCCCAGTCCTGCTGCTGACACGCCCACGTGCTCTGACTGAGAATATGGCAGTGAGTTTTAGCCTTTTAAACTCAAATGAGACAATAGATAAAAGAATAAATTGATGTTTATATTGGACTTAATTGTAAAGCTCTTGGGAAGATGTGAGTGTATCGCATTGCATTGCGTGAGCTCTTGCCttgaaaatagagaaaatggacaAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577336.1 lncRNA downstream 33331 17068536 ~ 17078161 (-) True LOC117596165
TU447211 lncRNA downstream 59227 17032903 ~ 17052265 (-) True G377474
TU447172 lncRNA downstream 115843 16995398 ~ 16995649 (-) True G377441
TU447151 lncRNA downstream 252783 16856779 ~ 16858709 (-) True G377422
TU447085 lncRNA downstream 425008 16645096 ~ 16686484 (-) False slc25a10
TU447707 lncRNA upstream 122937 17241835 ~ 17253715 (-) True G377847
TU447754 lncRNA upstream 197653 17316551 ~ 17316980 (-) True G377874
TU447757 lncRNA upstream 201753 17320651 ~ 17337648 (-) True G377877
TU447766 lncRNA upstream 219389 17338287 ~ 17338671 (-) False LOC113526761
TU447776 lncRNA upstream 262283 17381181 ~ 17381602 (-) True G377892
XM_034299901.1 mRNA downstream 121476 16975606 ~ 16990016 (-) True LOC113537677
XM_026932303.1 mRNA downstream 156308 16948813 ~ 16955184 (-) True LOC113537678
XM_026931891.2 mRNA downstream 162693 16943116 ~ 16948799 (-) True LOC113537424
XM_034299899.1 mRNA downstream 190912 16916853 ~ 16920580 (-) True LOC117596111
XM_034299898.1 mRNA downstream 194666 16915413 ~ 16916826 (-) True LOC117596110
XM_034300261.1 mRNA upstream 13039 17131937 ~ 17145391 (-) False LOC113525649
XM_034300259.1 mRNA upstream 13039 17131937 ~ 17145391 (-) False LOC113525649
XM_034300260.1 mRNA upstream 13039 17131937 ~ 17145391 (-) False LOC113525649
XM_034300263.1 mRNA upstream 13039 17131937 ~ 17145391 (-) False LOC113525649
XM_034300262.1 mRNA upstream 13039 17131937 ~ 17145391 (-) True LOC113525649
TU447143 other downstream 259829 16845012 ~ 16851663 (-) True G377416
TU447144 other downstream 265890 16845012 ~ 16845602 (-) False G377416
XR_004577334.1 other downstream 636061 16425454 ~ 16475431 (-) False LOC113537389
TU446672 other downstream 947122 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 956011 16152919 ~ 16155481 (-) False zgc:158803
TU447682 other upstream 63834 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 147331 17266229 ~ 17268030 (-) True G377862
TU447860 other upstream 589102 17708000 ~ 17712592 (-) False ubl5
TU447895 other upstream 684362 17803260 ~ 17814445 (-) True G377994
XR_004577358.1 other upstream 1044648 18163546 ~ 18166960 (-) False LOC113524896

Expression Profile