RNA id: XM_026932107.2


Basic Information

Item Value
RNA id XM_026932107.2
length 1359
RNA type mRNA
GC content 0.43
exon number 5
gene id urp2
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5409611 ~ 5412773 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTACTTGGTTTAAAAGGCGTGACAGCACCTGCATGATGGTAGAGAAAGCGAAGCGCAACATTGCAGCAACAGCGCATAATAGACATCACACGTTCGACAAGCCTTCTCATTGTAGGGGCGCATTAGTGTAACAAGTGTGTGTATCGCATTGAGAGATGATATATATCATCTATTAAAAACAAGGCTCAATTAAACTCTGTACTGGACAGTTATTTTTGCTTGTAAAAGCCTGAAAAGCTAGATCTGAAATATATAGTGTCCCAGACAAAGCCAAGATGCAGAAAGGATGCATGCTGAAATTAATGTCAGTAGTAGCAATGTTGATTTTAGCTCCAGCTGTGGATGCTGCACCAATAACCTCAGAAGTACCAGACCTTCAACAGGCATCATTAAGAGGTGACAAGAAACCAACAGATCCTTGGACGAATGGCCCAGACATCCATGATATGACTACGTATTTTGATGGACAGGAAATGACAGTGCCTGTAAGACCTTCAGGTAGCTTAGACAAAGCCACAAGCAGTCCACATTATCTGGACAAAATATTGGCAGCAACTAACGGTCAAGGCCAAACACTGAAGATTGCTTCAGTTCCAGTTGATTCTGATGGACTAGAAAACATAGTAGCAGCAACCAGTGGTTTGGATAGCCAGCTTAACCTAGGCTCTGTAATGGATGACCATGAAATAGAGGAGCATGCGCCAATGGAAGAGAGCAGTGTTCACAAACCACTGAAGCTAACACCAGTAAGCGttatttcaaataaacaaagcaaGACTTTGTTAGAGAGCAAAGGTGCTAAGAGAAATCCAGCCAGCAGCACACCAGATAGACGAGAGAGGATTCTGCATATGCTGAGTGCTCTCGAGGAGCTTCACAGGTCACTGAACAGTACACTGAACAGCCGTCTCACCATCATAACAAGAGGTAATAGCAACAGTCGCAGTTCAGGAAAAAAGAGTAAAATGATCACAGAGGGCAACATGAAATCAACTACAGTGTCATCTGTGGTCAGCAAAGGTGCTTCACCAAGGGCTAGCACTGATCTCCTGAATGGAAAGGCATTCAAAAAGTCTTTGCCATCAACTCCCAAGAAAACTAACAAGAGAGtttgctTCTGGAAATACTGCTCTCAAAATTAAGCATTTCTCACACTTCAATATCGCATTCTAACATGAGCCCATGCTCATCAGCAAACAAATCTAAGGCCACTTCTAACTGATGCTTCAACAACATACTTAACATGACTTACCCCAGTGACCTCGTATGACGTGTGTAGCCTCACTGCACGAAAGCCTGTTAACCTCCTTCTACAAGTCAGTGTTGTAtgacataaataaaactttacaagcatgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439335 lncRNA downstream 14599 5389822 ~ 5395012 (-) False LOC113537294
TU439334 lncRNA downstream 14842 5388904 ~ 5394769 (-) True LOC113537294
TU439337 lncRNA downstream 14842 5389330 ~ 5394769 (-) False LOC113537294
TU439338 lncRNA downstream 14842 5389623 ~ 5394769 (-) False LOC113537294
TU439333 lncRNA downstream 14842 5389822 ~ 5394769 (-) False LOC113537294
XR_003403776.2 lncRNA upstream 2853 5415626 ~ 5429432 (-) False LOC113537576
XR_004577293.1 lncRNA upstream 2948 5415721 ~ 5429432 (-) True LOC113537576
TU439410 lncRNA upstream 93339 5506112 ~ 5506317 (-) True G370941
TU439411 lncRNA upstream 95329 5508102 ~ 5508369 (-) True G370942
XR_004577342.1 lncRNA upstream 97943 5510716 ~ 5518380 (-) True LOC117596170
XM_026931711.2 mRNA downstream 14799 5389798 ~ 5394812 (-) False LOC113537294
XM_026931789.2 mRNA downstream 69090 5331920 ~ 5340521 (-) True LOC113537353
XM_026931790.2 mRNA downstream 69095 5331920 ~ 5340516 (-) False LOC113537353
XM_026931938.2 mRNA downstream 93416 5305078 ~ 5316195 (-) True LOC113537467
XM_026931939.2 mRNA downstream 111438 5288685 ~ 5298173 (-) False LOC113537467
XM_026931627.2 mRNA upstream 117219 5529992 ~ 5547031 (-) False LOC113537235
XM_026931631.2 mRNA upstream 121642 5534415 ~ 5547031 (-) False LOC113537235
XM_034300297.1 mRNA upstream 122512 5535285 ~ 5547032 (-) False LOC113537235
XM_026931629.2 mRNA upstream 122512 5535285 ~ 5547032 (-) False LOC113537235
XM_026931628.2 mRNA upstream 122512 5535285 ~ 5547032 (-) True LOC113537235
TU439054 other downstream 520230 4843329 ~ 4889381 (-) True G370658
XR_004577360.1 other downstream 884827 4524502 ~ 4524784 (-) True LOC117596183
XR_004577367.1 other downstream 946397 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 948296 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 950188 4459317 ~ 4459423 (-) True LOC117596196
XR_004577341.1 other upstream 121642 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 121642 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 121642 5534415 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other upstream 121642 5534415 ~ 5547031 (-) False LOC113537235
XR_004577339.1 other upstream 121699 5534472 ~ 5547032 (-) False LOC113537235

Expression Profile