RNA id: XM_026932121.2


Basic Information

Item Value
RNA id XM_026932121.2
length 1237
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC113537574
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11302783 ~ 11308486 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCTAACGGCAGGTCAGCGGAAGTGACGTGTCTGTGGTTGCTCAGCGTTCAGCGCGAGCGTTTCCTAGCCAAGTTTCAGTTTTATGCACGAGCGCCAGCGCTCTGATTTATTGTCGGTGAGGCGCAGCGAGGACTCACAACTTCAACatcacaattattattaattaaaactcACTGGATTCACTACTGAGCTTACAGTCAGTTTCAGCAGGCTGTACAGTGTGTCTAGGtataacagacagagagacagacacaggcaCCCTGACATCCGCCGGAGACACAGCAGACGAAGACAAACTGAGACTCCTTTAGCACACAGACAGCAGCATCTCTCCTGCATTCTGGACATCATGCCTCGTTCTTTCCTGGTGAAAAAACGCAGGAGGGGAGGCTCTAGATCTTCCCTTCCTACAGACTGTATGCCGTGTCTGGGTGTACGAGGCTGCATAGGTGCAGGAACCCGAGACGAGCCAGAGCCAAATGTTGAGGCTTCATCTATACAGCAGACGAAGACACACCGGGACTGGACAACAGGTTTTAGTGGTTGTGAATTCCCTTCACTGATTCCCTGGCATCACATTCAATCCAGCACCACAGAGGATAAACAGGACCTGGGAAGTGAGTTAAAGTCCAGCAGTAAAGACACAGATTATTCAGCGATCAGCTCCTCTATTTCACGCTGCCGGTTATGTAGCAAGaacttcttttccttttctgacTTGGAGGCCCATCATTACAAATGTCACGAAGGTCACAAGCCGCCCATAGTCTGCATTAACAGCAGCGAACCAGTGACACCGCACAGAACAAAGGAGCGAAAGTTCGAATGTAAAGTGTGTGGGAAGCTGTTCAAACGTTCCTCCACTCTCTCCACACACCTGCTGATCCACTCAAACACAAGGCCGTACCCCTGCCAGTACTGTGGCAAGAGATTCCACCAGAAATCAGACATGAAGAAACACACCTTTATTCACACGGgagAGAAGCCACACGTGTGCAGGGTGTGTGGGAAGGCCTTCAGCCAGAGCTCTAATCTaatcacacacagcagaaaGCACTACAGGCCCTTcagctgagcacacacacacacacacacacacacacacatacacacttctcAATTTCTACTTGTAAATATTTCCCACTTTATGACAATAAACCTTTGTAAACATTTATCAGCAGATAAAATTAATTGATGACACAgatcacagaaataaaaaagattggCCACACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443185 lncRNA downstream 59946 11238241 ~ 11242837 (-) True G374198
TU443184 lncRNA downstream 59946 11238717 ~ 11242837 (-) False G374198
TU443180 lncRNA downstream 65352 11237062 ~ 11237431 (-) True G374196
TU443094 lncRNA downstream 155110 11147454 ~ 11147673 (-) True G374111
TU443088 lncRNA downstream 162972 11139183 ~ 11139811 (-) True G374105
TU443231 lncRNA upstream 50357 11358843 ~ 11360421 (-) True G374230
TU443391 lncRNA upstream 285480 11593966 ~ 11594981 (-) True G374370
TU443394 lncRNA upstream 286706 11595192 ~ 11596239 (-) True G374371
TU443474 lncRNA upstream 360507 11668993 ~ 11669256 (-) True G374442
TU443528 lncRNA upstream 444088 11752574 ~ 11755115 (-) True G374495
XM_026932104.2 mRNA downstream 22655 11275262 ~ 11280128 (-) False emp1
XM_026932103.2 mRNA downstream 23420 11275262 ~ 11279363 (-) False emp1
XM_026932105.2 mRNA downstream 23569 11275262 ~ 11279214 (-) True emp1
XM_034299986.1 mRNA downstream 44308 11247809 ~ 11258475 (-) True si:ch211-243a20.3
XM_026931676.2 mRNA downstream 250671 11046759 ~ 11052112 (-) True trappc5
XM_026932169.2 mRNA upstream 4279 11312765 ~ 11352381 (-) False si:ch211-239f4.1
XM_026932167.2 mRNA upstream 4279 11312765 ~ 11352381 (-) False si:ch211-239f4.1
XM_034300294.1 mRNA upstream 4279 11312765 ~ 11352381 (-) True si:ch211-239f4.1
XM_026932111.2 mRNA upstream 52940 11361426 ~ 11370055 (-) True LOC113537567
XM_026932240.2 mRNA upstream 66019 11374505 ~ 11379803 (-) True LOC113537638
TU442843 other downstream 430237 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 1384043 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 2695943 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 2870359 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 2973757 8320984 ~ 8329026 (-) False timmdc1
trnar-ucu_14 other upstream 164394 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 2000552 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 2015596 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 2017031 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 2017507 13325993 ~ 13326084 (-) True trnar-ucu_17

Expression Profile