RNA id: XM_026932139.2


Basic Information

Item Value
RNA id XM_026932139.2
length 1670
RNA type mRNA
GC content 0.41
exon number 8
gene id tspan34
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11434514 ~ 11446094 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCCATTTGATCCCAGTTCATCACGGGACATAACGCTCCACAAATAACGCTCCACACCTGGACCAGTGAACTCACCTGTGAACAGgacaaaacagaaaaaacttcAAGATGTGCTGCTCGTGGTTCCTGAAAACAATGATGTTCTTCTTCAATGGGGTCATCTTTTTGGCAGGTGCCGCAATCCTGGGCGTAGGGATCTGGGTGACAGTAGACAGCAGCTCCCTGCTTGGTGTATTATCTAATATTGACGGTGCGCCCTCTGAGTTGGCTCAGCTGGCTAACGTGGGCTACCTGCTGATCGTCGTGGGGTCCATACTCGCCATCATGGGCTTCCTGGGCTGCTGTGGGGCCATAACTGAGAACAAGTGCATGCTTCTGATCTTCTTCATCATCGTGCTTATCATCTTCATTGCTGAGGTGGCTGGGGCCATTGTAGTTCTGGTGTTCAAGCCCTTGgCCAAGGATATTTTTGTCAGTCTGAATGAGAATTTTGTTAAGGCCATCAGGAAAGACTATGGAGACCAAAAAGACTTCACAGCCGTCCTGAATAACACTATGATACAgCTGAAATGCTGTGGATTCAACAACTACACCGACTTCGATGGATCTCCTTTTGAATCGTCCACCAAGCTTTACCCAGAGCCTTGCTGCCCTGGCAGCAATAAGTGTGATTTGAGCACAGCAGAAAGCAAGaacgTGGAGGGTTGTTTCAACGCACTGGTTGAACTGATAGAAAATAACGCTGCTTTGCTAGGAGGCGTGGCCCTTGGCATCGCTGCTCTAGAGattGCTGCGATGGTTGTGTCCATGGTCCTGTACAATAACATTGGGAAATAATTACAAAAGCTAAAGTTCCACCAAGCACTGATTTATGTACTTCTTCTTAGTACTACTAACTTCACTGCAGGCTGACTGCTGTCTTACAGCTGCCTATTGATACAAATTCTCACAAGTCAACCCTTATGAAAAGTTACCAGTGTTTAAGGTCAGAGTTTGAAGGGGTTCATTAGTACGAAACGCAACTAACCTGCGTTAATTATAATCTGTGTGAATATTGCAAGAGATCGGATTGCATAGGCTAACTTCACCCAAGCTTGCTAATAAGACTACGCATGAATAAGCTCTACTTAGAAACAGTTAATatgatcttttttatttaatgtctgttGGTGCCTATTagcgtttatttatttgtaagttTGTAAGATTCATGTTGGATGTCATATTAATCAGAGCATTGTCACCCACACTCACAGTTCCTAACACTCATATTGTTGGTTAGACTCTTGTCTAGTCCAGATTTGAATATTTGCTTCCTGTTTACTCtgtcataaaaacaaaatactatGTAACATTGGCCATGATGCATATGGTAAATGAATACTGTCTTGTAAAACCCTTAATGCCTTATCTAAAATTTGAAATGATCTTGTTCTGTTGGCTCCATTTTGCTTCTGTTTTAACTGAAATGCGTAAAGGTTTCTGCCGATGGAACAAGACTAGAAACAGacaataatatcataataaaaatattatatttctagTTGATATCATTTTTTCACTGTAAAGCAAGATGTCCTCTCTTATGTATGTATAGTTTTATGTTGTAATGAAATgtactgaaatgtttatttgtgtaaatctaaataaaagacTTATTCGTGTAGTA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443231 lncRNA downstream 74093 11358843 ~ 11360421 (-) True G374230
TU443185 lncRNA downstream 191677 11238241 ~ 11242837 (-) True G374198
TU443184 lncRNA downstream 191677 11238717 ~ 11242837 (-) False G374198
TU443180 lncRNA downstream 197083 11237062 ~ 11237431 (-) True G374196
TU443094 lncRNA downstream 286841 11147454 ~ 11147673 (-) True G374111
TU443391 lncRNA upstream 147872 11593966 ~ 11594981 (-) True G374370
TU443394 lncRNA upstream 149098 11595192 ~ 11596239 (-) True G374371
TU443474 lncRNA upstream 222899 11668993 ~ 11669256 (-) True G374442
TU443528 lncRNA upstream 306480 11752574 ~ 11755115 (-) True G374495
TU443718 lncRNA upstream 488440 11934534 ~ 11943075 (-) True G374657
XM_026932358.2 mRNA downstream 24400 11404116 ~ 11410114 (-) True psmb13a
XM_026932009.2 mRNA downstream 31941 11399622 ~ 11402573 (-) False LOC113537507
XM_026932007.2 mRNA downstream 31946 11399622 ~ 11402568 (-) False LOC113537507
XM_034300301.1 mRNA downstream 32083 11399622 ~ 11402431 (-) True LOC113537507
XM_026931675.2 mRNA downstream 43312 11385636 ~ 11391202 (-) True psmb12
XM_026932090.2 mRNA upstream 2285 11448379 ~ 11464622 (-) False rab3da
XM_026932091.2 mRNA upstream 2285 11448379 ~ 11461677 (-) True rab3da
XM_026932171.2 mRNA upstream 21310 11467404 ~ 11471543 (-) False pld6
XM_026932175.2 mRNA upstream 21310 11467404 ~ 11471531 (-) False pld6
XM_026932172.2 mRNA upstream 21310 11467404 ~ 11471495 (-) False pld6
TU442843 other downstream 561968 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 1515774 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 2827674 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 3002090 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 3105488 8320984 ~ 8329026 (-) False timmdc1
trnar-ucu_14 other upstream 26786 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 1862944 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 1877988 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 1879423 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 1879899 13325993 ~ 13326084 (-) True trnar-ucu_17

Expression Profile