RNA id: XM_026932144.2


Basic Information

Item Value
RNA id XM_026932144.2
length 2307
RNA type mRNA
GC content 0.49
exon number 9
gene id poll
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12571039 ~ 12578393 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATCCTTTTAAACGTCTTGTTTCTCTTCTTGAAGGTTGTGTTGTGGGTATTTCGGTAGTTGGGGGTTTTCAAGAAAGCTGTATGGCGGATATGTGGGGAGaataacacattataaaacGGAATCTCACTTGTCACTTACTCGAAATGGAGACTCACGGTATTatgaaagccttcccaaaagtgAAGAGACATCGGCCACATCAGGGTAAAGATGTTCCCCCAGTCAAGAAATCTCCGAGTCAGCCTATTACTGGGAACGTATTTCAGGGTGTCTGCGTCCATATAGTCCCTGCTGGCATAGGGAATGCCCGATGTGACATATTCCAGCAGCAGATCGTGCAGAATGGAGGCCAAGTGGAAGCTGCTTACGGTCCCAGCTGCACGCACGTGGTCGTGGACGAGTCGGTGGACAGGGAGCGAGCGTTGAGGCTGCTGAAGATGGAAACCCTTCCCCCTGCTGTGCAGCTGGTAAAGTGCACTTGGCTCAGTGCTTGCATCTCTGAGAAGAAGTTTCTGAGCACAGAAGACTACAGGCTTCATCCATGCAACCGTCCTCAGGATGCTCCCTCTGAGGAGCCAAAGCAGAATGTTGTCAGCCGCATCCCTATTCCTGAGGAAAAACAGCCACCGGATCACAAATCAGCTCAAGATGATCCAGCTGACGTGGTGCCTGAGACTCAGGAAGAACCTCTAGAGGAAGACGCTGTGTCACAGAACGATTTGGAGGCTCTGATCAGTGGGGTTAAACATGATTCTGGCGCTTCAGGTGACACGCAGAATGTATCAGAAAAGACAAAGGTGCTGGGAAAGTGGGTGTGTGCCCAGTCGTCTCAGACAAAGAGCAAGAACCACAACAATCACATCACTGACAAGCTGGAGCAGCTAGccaaaatgtacacacacacaggtgacaaGTGGAGGGCGCTAAGCTACTCGAAAGCAGTTAATGCACTCAAGAGCCATCACAAGCCAATCTCTTCATATGAGGAAGCCTGTAAGATCCCAGGCATCGGCAAGAGCATGGCCAATAAGATTGTGGAGATCATGGAGAGTGGGCACCTGCGGAAGCTGGACCAGTTCGGGGAGGCCGTGCCCATCTTGGAGATGTTCACTAACATCTGGGGTGTTGGCTCAAAGACTGCCCAGCTTTGGTACCAACAGGGATTTCGTACGCTGGAGGATATTCGCACCAAGGTCACTTTGACTCACACACTGAGAATTGGCCTGAAGCACTACGACGATTTCCTTGATCGGATGCCAAGAAGCGAGGCAGCCGCCATCGAGAAAACGgtgagagaggCCGCACACAGCGTGAACCCAGACCTGCAGGTGGTGGCGTGCGGCTCGTACCGACGTGGGAAGCTCACATGTGGAGACGTGGATGTGCTCATCACTCACCCAGATGGCCAATCGCACAAGTGTGTCTTTAGCAAAGTGCTCCAGATCCTCCATCAGAACGGCTTCTTGACTGACGATTTGGTGAGCCACGAGGAGAACGGCGAGCAGAAGAAGTACATGGGCGTATGTGTCCTGCCAGGCCCGGGTCAGCGCCATCGGAGGCTCGATGTCATTGTGGTGCCACAAGATGAATTCGCATGTGCTCTACTCTACTTCACTGGCTCGGCCCATTTCAACCGCTCCATGCGTGCACTCGCCAAGACCAAGGCCATGAGCCTGTCAGAACACTCGCTGAACACCGGCGTGGTGCGCGAGCGTGGCGTGAAGGTGGTACCAGGTTTGCCACTGAGCACGCCTACTGAGAGGGCGGTCTTTGAGCATCTGGGCATCCCATACAGGGAGCCTCATGAGAGAGACTGGTAGCAGGACACATCAAAATAGGATAGGAATGAAAGCATGTACTAGCTACTGTACTTCTCAATCCCaaagttatattttaatatttttatattttagatgtAAAAGCAGAATGGTGCAACACATGAGTTCCCCATAACTGGGATTGACAACTGCAGCTGTAATGCACTGCAATGCATTGACTACGCAATAATAATTATCCACCCTCTGAATGTTTATGTAAGAAAAagtttttatctctttatcttAAAACCCTATAAACTACACCATATAGATGAGAGATGAGGGCACTGATCCTTGATCATCACTCTTTTTAACTATGGTCCcagatactgtatgtatttattgtgcTGCTTGATGCTGACATTTATAATGAGATTGATTGTAATGGACATATGGATGAAGAAAAAATCATGTGAGTGCCAGAATGTGTGAATGAGGTCCAGTTTTGGTTACCTTATAAAACAGCCATGGAGCACTCGATTGCCTCA

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444111 lncRNA downstream 10214 12560601 ~ 12560825 (-) True G375018
TU444089 lncRNA downstream 44220 12526620 ~ 12526819 (-) True G375001
TU444050 lncRNA downstream 129500 12441321 ~ 12441539 (-) True G374963
TU444049 lncRNA downstream 133353 12437356 ~ 12437686 (-) True G374962
TU444048 lncRNA downstream 133819 12436772 ~ 12437220 (-) True G374961
TU444126 lncRNA upstream 6052 12584445 ~ 12584659 (-) True G375027
TU444129 lncRNA upstream 6767 12585160 ~ 12585597 (-) True G375028
TU444162 lncRNA upstream 46738 12625131 ~ 12625619 (-) False LOC113537246
TU444203 lncRNA upstream 117622 12696015 ~ 12697218 (-) True G375097
TU444227 lncRNA upstream 163032 12741425 ~ 12741652 (-) True G375119
XM_026932391.2 mRNA downstream 741 12563004 ~ 12570298 (-) False wbp1lb
XM_026932390.2 mRNA downstream 742 12563004 ~ 12570297 (-) True wbp1lb
XM_034299940.1 mRNA downstream 24616 12536497 ~ 12546423 (-) True as3mt
XM_026932278.2 mRNA downstream 35808 12502681 ~ 12535231 (-) True cnnm2b
XM_026932279.2 mRNA downstream 35808 12502682 ~ 12535231 (-) False cnnm2b
XM_034300265.1 mRNA upstream 7333 12585726 ~ 12592448 (-) True fgf8b
XM_026932069.2 mRNA upstream 30660 12609053 ~ 12622350 (-) True slc2a15b
XM_034299957.1 mRNA upstream 46658 12625051 ~ 12630403 (-) True LOC113537246
XM_034299933.1 mRNA upstream 65546 12643939 ~ 12656803 (-) False LOC113537226
XM_034299932.1 mRNA upstream 65550 12643943 ~ 12659493 (-) False LOC113537226
trnar-ucu_14 other downstream 1098068 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 1698493 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 2652299 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 3964199 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 4138615 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 730645 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 745689 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 747124 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 747600 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 749659 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile