RNA id: XM_026932149.2


Basic Information

Item Value
RNA id XM_026932149.2
length 1112
RNA type mRNA
GC content 0.52
exon number 6
gene id prdx2
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14345342 ~ 14353154 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGACGCGTGATGGTGGCCCCGCCCCCATGTGGTATCCTCGGGTCACGTGGTTGAGTGCCGCTTGCTCAGCCGGTGCTGTGAGGGAGACTGGAGCGTCCTCCATCTGTAACGCCGCTTTCTCAGTCGCAGAACAGAAAATCAGCAACAAGCCCTCGAGATGTCTGCTGGAAACGCCAAGATCGGTCATCCTGCTCCTCAGTTCAAGGTCACAGCAGTGGTGGACGGCCAGTTTAAAGATGTCCAGCTCTCCGACTACAGAGgaaagtaTGTGATTTTGTTCTTCTATCCTCTGGACTTCACCTTCGTGTGCCCCACTGAGATCATCGCCTTCAGCGATCGCGTCGAGGAGTTCCGTAAGATCGGCTGTGAGGTCCTCGCTGCCTCCACCGACTCTCACTTCAGTCACCTGGCCTGGATCAACACCCCGAGGAAGCAAGGAGGTCTGGGCTCCATGAACATCCCTCTGCTGGCCGACCTGACCCAGTCCATCTCCCGCGATTACGGCGTGCTGAAGGAGGACGAGGGCATCGCTTACAGAGGGCTGTTTGTGATCGATGGTAAGGGCATCCTGAGGCAGATCACCATCAATGACCTGCCAGTGGGCCGCTCGGTGGACGAGACCCTCCGCCTGGTTCAGGCTTTCCAGCACACCGACAAGCACGGAGAAGTCTGCCCCGCTGGATGGAAGCCCGGAAGTGACACCATCATCCCTGACGTTCAGAAGAGCAAGGAGTTCTTCTCCAAGCAGTAACGTGTTCCTCGCATCTGCCCCGGAGACTCTGACCCTGCGGGGGTGCTGAAGCACTTAATGCTGAGCTCTGATTAGACCactgtgtcctttttttttttttttttctctcctctgctGTTTATGAGCCTTAGAGAGTGAatcttaacattaacattaacatgtcttctgtttttgtctgcTGTTATCTCATCTGAATTTAAGTCTGTTGTCACATGTGCTGAAGTTCctgtagtttttttgtttttttttccccaagttaTTATGAAAACACTGCGAAGGATTTTGTACTAGTCAGCCATAGAAGTCTGCTGTGTTAACCATCCTGAAATTGTCCAATAAAGATGGTggtttaaaaatga

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function

KEGG:

id description
K03386 PRDX2_4, ahpC; peroxiredoxin 2/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445312 lncRNA downstream 4952 14322184 ~ 14340390 (-) True G376038
TU445153 lncRNA downstream 70224 14274327 ~ 14275118 (-) False dand5
TU445072 lncRNA downstream 164728 14106222 ~ 14180614 (-) True rnf11a
TU445099 lncRNA downstream 220084 14121498 ~ 14125258 (-) True G375871
TU445091 lncRNA downstream 259901 14078964 ~ 14085441 (-) True G375864
TU445324 lncRNA upstream 30054 14383208 ~ 14455469 (-) True G376048
TU445329 lncRNA upstream 33184 14386338 ~ 14387875 (-) True G376050
TU445344 lncRNA upstream 107129 14460283 ~ 14524503 (-) False meis1a
TU445336 lncRNA upstream 108988 14462142 ~ 14466508 (-) True G376055
TU445374 lncRNA upstream 179213 14532367 ~ 14532684 (-) True G376093
XM_026932339.2 mRNA downstream 68805 14274398 ~ 14276537 (-) True dand5
XM_026932201.2 mRNA downstream 98084 14136218 ~ 14247258 (-) False LOC113537614
XM_026931791.2 mRNA upstream 8310 14361464 ~ 14370687 (-) True ctsh
XM_034299883.1 mRNA upstream 58218 14411372 ~ 14430546 (-) True aplf
XM_026931768.2 mRNA upstream 123384 14476538 ~ 14482864 (-) True etaa1
XM_034299926.1 mRNA upstream 123384 14476538 ~ 14482657 (-) False etaa1
XM_026931769.2 mRNA upstream 123931 14477085 ~ 14482864 (-) False etaa1
XR_004577346.1 other downstream 70212 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 306356 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 306744 14038528 ~ 14038598 (-) True LOC113537774
XR_003403797.2 other downstream 307480 14037731 ~ 14037862 (-) True LOC113537775
TU445045 other downstream 314463 14027294 ~ 14030879 (-) True G375826
TU445430 other upstream 329948 14683102 ~ 14684328 (-) False G376143
TU445400 other upstream 344085 14697239 ~ 14712377 (-) False ifngr1
TU446065 other upstream 1102625 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 1102625 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 1102625 15455779 ~ 15457083 (-) False dpy30

Expression Profile