RNA id: XM_034300334.1


Basic Information

Item Value
RNA id XM_034300334.1
length 2689
RNA type mRNA
GC content 0.48
exon number 10
gene id mid1
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7253751 ~ 7302564 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTTTAACACTACCAAAAGAGATTAGTATTTGAGGCCAGCATATGATAGACCTTTTTTATGGATAAGAGAacacttcatttcaaataatgAAAGCATGGCATCACACACCTCCATGTCAGTGACAGCTGCCTGGCTCTCCCGGATTTTGCTAATGCCATTCCCTCTTCGCTCCACCTAAAAAGGATGGAAACCCTGGAGTCGGAGCTGACGTGCCCGATCTGCCTGGAGCTATTTGAGGACCCCCTGCTGCTGCCCTGTGCCCACAGTCTGTGCTTCAATTGTGCTCGCCGCATCCTGGTCTCGCATTGCACCTCAGGTGAGCCAGCCGACGCCATCTGCGCCTTCCAGTGCCCTACGTGCCGCTATGCCATTTCACTGAGCCCACAGCGTGGCCTGGATGCACTCAAGCGCAACGTCACCCTCCAGAACATCATTGACCGTGTCCAAAGGGCTTCGACTTCTGCCACTCTTCTTCTGTCCTCCAGCGGGCACAGTTCACCAGGCGACAGCCCTCTAGGTGCCATGACGACTGCCACTGCACCCTCCTCACCCACTGAGCTGGTGCAATGCCAGTTTTGTGAGCAGGAACCGCCACAGTGTGCTGTGAAGACCTGCGTAACATGTGAGGTGTCTTACTGCGAGGAGTGCCTGCGTGCCACCCACCCCAACAAGAAACCCTTCACTGGACATCGCCTCATTGAACCTTTGCCTGACTCACACCTCAGAGGCCTGCAGTGCCTTGAACATGAGGAGGAGAAAGTGAACATGTACTGTGTCACGGATGAGCAGCTCATCTGCTCCCTCTGCAAACTGGTGGGACGGCACCGTGACCACCAGGTGGCAGCGCTAAATGAGCGCTACGAGAAGCTAAAGcaaacATTGGACGCTAACCTCAGCAATTTGATCAAGAGGAGCAATGAGTTGGAATCACTAATGGGGAAGCTGATTCAGACCTGTCAGCATGTGGAGgTGAATGCATCACGACAGGAAGGAAAGCTGATGGAAGAATGCGACATCTTGATCAGCATAATTCAGGAGAGGAGACAGATTATTGGTGCCAAAATCAAAGAGGGCAAGACGGTTCGACTGCGTAAACTAGCACAACAAATTGCCAACTGCAAGCAGTGCATAGAGCGCTCATCTGCTCTCATAACTCAAGCAGACCAGACGCTGAAAGAAACCGACCATGCTCGCTTCCTCCAGACTGCCAAGAGCATCTCAGAGCGAGTCTCCATGGCTACGGCATCCTCTCAGGTCCTGATACCTGAGATTAATCTGACAGACACATTTGACACCTTCGCATTGGATTTTACCAGAGAGAAGAAGATGCTAGAAAGTCTTGATTACCTCACAGcaCCCAGTCCTCCAGGTATCCGAGAGGAGCTGTGTACGGCATCCTATGACACCATAACTGTGCACTGGACATCTGATGATGAGTTCTCTGTAGTTTCTTATGAGCTTCAGTACACCATCTTTACTGGCCAGTCAAACATTGTCAGTCTCTGCAACTCTGCTGACAGCTGGATGATTGTGCCCAACATCAAGCAGAACCACTACACCGTTCACGGCCTGCAGAGTGGCACCAAGTACATCTTCATTGTCAAGGCCATTAATCAGGCAGGAAGTCGCAGCAGTGAGCCTGGAACACTCAAAACCAACAGTCAGCCATTTAAGCTTGACCCAAAGTCTGCACACAGAAAGCTAAAAGTATCCCATGACAACCTGACGGTGGAGCGTGATGAGATATCCTCAAAGAAGAGCCACGGACAGGAGCGCTTCAGCAGCCAAAGCAGCTACGGCGTTATAGGAAACGTGTACATCGACAGTGGCCGCCATTATTGGGAGGCTCTAATTGGAGGGAGCACCTGGTATGCTGTGGGCATAGCCTATAAGTCAGCACCCAAGCATGAGTGGATTGGGAAGAACCCTTTGTCTTGGGTGCTGTGCCGTTGCAACAATTCCTGGGTGGTGCGCCACAACAGCAAAGAGATGGCCATTGACCCCTCACCACACCTGAGACGAGTCGGCGTGCTCCTGGACTACGATGCAGGCTCTCTGGCTTTCTATGATGCCGTGAGCTCTCAGCACCTCCACACCTTCCATATCACCTTCACCCAGCCTGTTTGTCCTGTATTTAATGTCTGGAACAAATGTCTTACAGTCCTAACAGGCCTTCCTATCCCAGACCATCTGGAGGGTGTAGAGGCTTTCGACTGAGGCTATGGTGCTTCTTTCTAAATAAAAGAGTGGACCTTGGGCTGCTTAGGTTTGCTTTCAGCTCTGGCCATGACCTTGTTGGCCACATCATATTTCCAAttcattaagattttttttaaagcatgcaCAGAAGATTTTGACAGAAATTCCACCTTATATGCAAAAGTAAAGGTTTGATAAACCCTGAATTCaattgacaaaatattttttacctTTGGTCTTAGTGTATAATAAGCAGTGAAATTTTAAGAAGACCACAATAATTTGATATCAGGTATTTTGGAGGAATTTTGCACATGTCTATAtgttatatctatatttatgaAAAGGAGGAAGATCACATTATAGTCTTTTAATTTGGTGCAATTACATGATTAGGTTTCTTAGTGCAATTTCACCTGATATGCAGATATTAAAAATAGTGAGCAATGGACTAGTTTTACTTAATAAAAAGGACATTTCAGCAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440456 lncRNA downstream 70365 7183176 ~ 7183386 (-) True G371793
TU440449 lncRNA downstream 100592 7151438 ~ 7153159 (-) True G371787
TU440274 lncRNA downstream 352408 6891766 ~ 6901343 (-) True G371634
TU440265 lncRNA downstream 371971 6879870 ~ 6881780 (-) True G371625
TU440266 lncRNA downstream 379331 6870572 ~ 6874420 (-) True pspc1
TU440604 lncRNA upstream 72832 7357311 ~ 7378538 (-) False LOC113537388
TU440608 lncRNA upstream 126502 7410981 ~ 7415018 (-) True G371929
TU440643 lncRNA upstream 183310 7467789 ~ 7468460 (-) True G371964
TU440646 lncRNA upstream 191424 7475903 ~ 7476105 (-) True G371967
TU440605 lncRNA upstream 193401 7477880 ~ 7478230 (-) False LOC113537388
XM_026931700.2 mRNA downstream 27102 7218365 ~ 7226649 (-) True ednrba
XM_026931777.2 mRNA downstream 58385 7184802 ~ 7195366 (-) False LOC113537349
XM_026931841.2 mRNA upstream 72792 7357271 ~ 7478509 (-) True LOC113537388
XM_026931842.2 mRNA upstream 72792 7357271 ~ 7421800 (-) False LOC113537388
XM_026931620.2 mRNA upstream 627731 7912210 ~ 7993096 (-) True fam155a
XM_026932396.2 mRNA upstream 721893 8006372 ~ 8010233 (-) True lig4
XM_026931738.2 mRNA upstream 758006 8042485 ~ 8054545 (-) True irs2a
TU440391 other downstream 185220 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 185284 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 890548 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1220358 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 1301438 5942429 ~ 5952313 (-) False LOC113537623
TU440780 other upstream 433784 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 627987 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 1036505 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 1145132 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 1306928 8591407 ~ 8606840 (-) True tsga10

Expression Profile