RNA id: XM_026932164.2



Basic Information


Item Value
RNA id XM_026932164.2
length 769
RNA type mRNA
GC content 0.53
exon number 2
gene id rln3b
representative True

Chromosome Information


Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15074671 ~ 15077616 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CACAATTTGTCCATCAGTCTCATCTTTGCTCATCATTCTATCCAGTCCTTACATTCAGTTCTTGCCGTTTTTGCCGTCATGTATAAAGAGATCGTGCTGACTCTGAGCCTGCTGGTGGCGCTGGTGTGCCGAGCCCAGGCCAACGAGGGTCACCCCATCTATGGCGTGAAGCTGTGTGGGAGGGAATTCATCCGTGCCGTCATCTTCACCTGTGGAGGCTCGCGCTGGAGAAGATCCGTGGGGATGCCAGGTGAAACTGGTGATTTAGCCAGCGACTTTTTCTCCACTCATGATGATGAGGCCTCAGACAGCTGGAGCTCCCAACTCATCCCCCATCTTTCTTACAAAGCTCAGGCTGACCCGGAGGTGGACGGCTTGGCCAGTGAGGGTCCAGACAGCTTAGCGTTCATCCGCCCGGCACGCTCACTCATCTCAGATGAGGTCCTCGAGGCTCTGCGCACCTCCGACAGGAAAGGCAGGGACGTGGTGGTGGGTCTGTCCAACGCCTGCTGCAAGTGGGGCTGCAGCAAGAGCGAGATCAGCTCCCTGTGCTAAAACAGACTCTTCCCTTCCAGCTCCATTCGTCCATGTGTGTCCATCTCAGACTGTAGTGTTGATGTCTTTAATGTTTGCTGTTGGGAGGGATGGTGTGTTAGGTGGCCTAATTTGAATACAGCAGCTGGGgtgtaatgtattaaaatttatgCAAGTGTGGTGCATCTCTGAAAGAAAACGTTTCTCTGTGTCTTACACTCTGCCCTGCCCTGAT

Function


GO: NA

KEGG:

id description
K22000 RLN3; relaxin 3

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU445961 lncRNA downstream 29312 15044712 ~ 15045359 (-) True G376574
TU445691 lncRNA downstream 39205 15035165 ~ 15035466 (-) True G376364
TU445642 lncRNA downstream 113619 14910767 ~ 14961052 (-) False akt3b
TU445468 lncRNA downstream 333122 14740261 ~ 14741549 (-) False b3gnt2a
TU445467 lncRNA downstream 334864 14739480 ~ 14739807 (-) False G376171
TU445990 lncRNA upstream 21400 15099016 ~ 15101012 (-) True G376602
TU445995 lncRNA upstream 39896 15117512 ~ 15117893 (-) False triobpa
TU446002 lncRNA upstream 54401 15132017 ~ 15132290 (-) True G376608
TU446008 lncRNA upstream 70169 15147785 ~ 15147985 (-) True G376613
TU446010 lncRNA upstream 75276 15152892 ~ 15153120 (-) True G376615
XM_026932137.2 mRNA downstream 2326 15060921 ~ 15072345 (-) True spast
XM_026932138.2 mRNA downstream 2327 15060921 ~ 15072344 (-) False spast
XM_034300028.1 mRNA downstream 116470 14953561 ~ 14958201 (-) False LOC113537617
XM_034300027.1 mRNA downstream 116474 14953561 ~ 14958197 (-) False LOC113537617
XM_034300026.1 mRNA downstream 116474 14953561 ~ 14958197 (-) True LOC113537617
XM_034300392.1 mRNA upstream 26561 15104177 ~ 15113293 (-) True dcaf15
XM_034300393.1 mRNA upstream 26561 15104177 ~ 15113156 (-) False dcaf15
XM_034299886.1 mRNA upstream 40117 15117733 ~ 15129256 (-) True triobpa
XM_026932052.2 mRNA upstream 58617 15136233 ~ 15142801 (-) True dla
XM_026932275.2 mRNA upstream 95122 15172738 ~ 15180828 (-) True ccsapa
TU445400 other downstream 362294 14697239 ~ 14712377 (-) False ifngr1
TU445430 other downstream 390343 14683102 ~ 14684328 (-) False G376143
XR_004577346.1 other downstream 799541 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 1035685 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 1036073 14038528 ~ 14038598 (-) True LOC113537774
TU446065 other upstream 378163 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 378163 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 378163 15455779 ~ 15457083 (-) False dpy30
TU446479 other upstream 840012 15917628 ~ 15920553 (-) True G376956
TU446429 other upstream 856021 15933637 ~ 15942686 (-) False khsrp

Expression Profile