RNA id: XM_026932179.2


Basic Information

Item Value
RNA id XM_026932179.2
length 3077
RNA type mRNA
GC content 0.40
exon number 14
gene id brat1
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5069360 ~ 5112747 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACAGCCACGAGGAAGAGGAGACACGGCGAAGCAGCTACAGGAATAAGACAGCCATCTTACTTAAGTTACCTGCATCACCAAGCCATGGACAGTGACTGCTTAACCCTACTGCCATCTGTTTGTGAAGTTCTGGCTGATTCCACACTTTTGCTACATGATGACACATCTTTGGAAAAGCTTCTTGATTGTTTTAAAGAACTGATAACGCAGAAAGACGAGCAGTATCTTATGCAGTATCTACCATATCTCCTGCAGTTCTTGCAGAGCATAACAAAATCTCAAACAGTAGATCCCTCTGTTTTTTCATTCTCACTCAAACTTGTTGGGCTGCTGGCAGCTAAAGAGTACAGTTTCACCTTGCTGGAGGAGAAAGGAGTGTTGGAGTATATGTTTCAGCCAGAGAGCTGGCATATGCTGGAACTCTGGAAAAATTCCTCAGTACGTTATGGGTGGCTACAGGGATTGTGGAATATGTTGCAGCATCCACAGTCCATGAACTTTTTCTGCAAGAATGGATTCATTAAGTTGCTCCTCCATCTGCAAAATGACAAAGGCCTTTTCATTACTTCTTTGACTAGTCAGATTTTAGCACACATTTTAAACTCCTTCATGCCAGTAGTGCTGAGCAACAGTACTAAGAGTGAGACCCCAAACTGCTGTCCTGTCAGCACTGAGTTTGTTTCAGTTACAAAAGAAATAATGAGCCATGTAGCTGCCTCATTAGCCTCACAGGAGCAGGCTGTTATCATCTCAGCCTTAAGGTTGTTGGCCACAATTCTCACCGAGTGTGGAGAACCACTCAAGAGAATGATTTGGGAACATGTTGTGGGACCACTGGAAGTATTAGCAAATGCAAAAGATGACTCATTTACACTGCACATCATAGCAGTCCTTCAAGCTGTTGCAAGGAGTCCTGTTTTGATCCAACCAGATTGTAGAGTGGAGACACTGATGGACATCATGTTGTTTTCAAGAAGTGCAACTGAATCTGTGCAGTGTGCAGCAATTATCTTGCAAATGGAAGACTGCCCTGAAGTTTTAAAATGGAAAGCCACAGATGTAATCATGCTTCCTCTACTGTGTGCCAGTGCATCCCCACTACAGCTTCATGAACCAGATAAGCTAAATGGCTACATATCACACTTGGAGAAGCAGCTATCCCTGAAAgccttctgtgtgtgtctgctcacTCAGAGCCTGTCCGGCATAGCAGAGCATGTATGTAAGAAATCTTTAACCGATATTCCTGTTCAACTGATTGCCTCTTCTGTGATAAAACTTCTGAAAATATGCATTGGCCATCGCCCCTTCACTCTACTGGAAGCTGGTACATTTCCTCACCTTATTGGCTGTTACAAGGTTCAGCAGTGCAGTATTGACCTACTAGGTGACCTCACTGTTTATGCAGAGAGCATGGACTTAATTCAGGAGGCTTTTACTGTTCTTCTGCAGTATCTGCAGTATCCTGGCACACATGCTACAGTTTTGAAGAAAACACATCAGGCCACTCTTAAATGGCTCAGTATCTGTTCACCATCATCAGATTTATGGAGGACAGTTATACATGagcTCTTTCAATTAATGAAGAAACATGTATGTGATGGACGATGGGAAGTGAGAGATTCAACTCTGGAGTTTATTACACAGCTCACAGCCAACCTCAAAGGTAATAGTAAATATACTGAAACTCTTCATAGTAGTGGCATGATCTCAGTGCTCTTCACCTCATTGTCAGATTTAGAAGGCTATGTCCAAGCAAGTGCAGTGGCGGCTCTTGGAGAGGCAATAACTACATCTGATGTCTGTAGCAATGTGCAGgAAAAAGCTGTGACACATCTGTTGAGCATACTCTCTCAAGATACACAGAGCTTCCCACATCGTGCTGCAGTGAAGGTCTTCACTGCATGGCTAAAAAGCCCACATTGTTGTACTGCCTTGGAGCAATCTCTTAGCTCAGTGTTGTTACTTGCTGGAAATGACTTTGACTGGGAGGTTAAAGTTCACACCCTGGAGTTAGCAGATGTATTGATGGACAAATCACTAGATCATTGTCCCTGTCACTTTCAGAAGATCTATAGAAGCTCTGAAAGTACATGCTTAATGCAGGCATTAACCAAACTGAAGGATTTAGGGGTATTTGAGTTTCTGTTTAAATGCTTATTTGACTGTGACAGAACTGTTTGTCAGAAAGCTTGTTCACTCCTGCTTAAGCTAAGAACATTTATGAAAGAGATTGCTACTGTTGACCACAAAGTCCTTAGACTTGAAATATGTAAGTACAGTTGGAATGAGGAAATACTTCATAGATACCACAAAAACCGAGAGGCCATTGAGCTTAACTGTGTGAAAAATGGAGACAAAGTATCTTGTAGGCAAATGGACAGTGAAGATTCTCTTGATGTATCTCCAAAAGAGATGGATCTGTGCCAGATATTAGAATTATTAGACCTTGAGAAGATGCAACATACTTTATCACTAAGTAGTGATCATGTGATAAATTCACCAAAATCACTAAtggaagacattttatttatgacaagagaaagtgaaaagaaTATTGCAGATTGCTATTGAAAATGAGTGCTCAAAAGTGGTAATCTTGTTGTGAGGCAGTACTCTTGACATTGTATCCTGATGGCTTTGTGTTGAACAGAGAAGCCTTTGTTTTATAACACTCATAAGTAACTTTAAATGTTAAGtttcatttacaaaatttaATATAGGGCTGTACTTTAAACTCAATTATGCTTGTACATAATTGCACATAACCCctgagcttctttttttttataactagCAACTTATAATGTCTCATGTCTTGAATGGAATGTGGATTGACTGTGGTTTTCCAATTAAATATGACTATTAAAAACTGTCGAAAGGGTGTAAGAAACATTCTTCTTAAATGGAAATGTAACTTGATACACATGATCTCTGTGGACCCCAAAGTAGTCATACtcatgttcttctttttttgtttgtttgtttgtttgtttttttttttttttttttttttggctattttcATGCTATTTGGCATTATCCAGTTCATCAATAAACATATGTGATGTCCCAa

Function

GO: NA

KEGG:

id description
K23112 BRAT1; BRCA1-associated ATM activator 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439118 lncRNA downstream 6596 5062554 ~ 5062764 (-) True G370706
TU439117 lncRNA downstream 6924 5062144 ~ 5062436 (-) True G370705
TU439112 lncRNA downstream 10306 5058853 ~ 5059054 (-) True G370702
TU439109 lncRNA downstream 23114 5046040 ~ 5046246 (-) True G370699
TU439059 lncRNA downstream 155325 4896227 ~ 4914035 (-) True G370663
XR_004577307.1 lncRNA upstream 6 5112753 ~ 5115118 (-) True LOC117596137
TU439123 lncRNA upstream 22091 5134838 ~ 5135130 (-) True G370711
TU439125 lncRNA upstream 23460 5136207 ~ 5136693 (-) True G370713
TU439215 lncRNA upstream 77328 5190075 ~ 5190300 (-) True G370784
XR_003403756.2 lncRNA upstream 77600 5190347 ~ 5191647 (-) True LOC113537335
XM_026929095.2 mRNA downstream 442119 4619201 ~ 4627241 (-) True knstrn
XM_026929207.2 mRNA downstream 450552 4596430 ~ 4618808 (-) False cfap221
XM_026931934.2 mRNA upstream 140946 5253693 ~ 5268198 (-) True LOC113537465
XM_026931935.1 mRNA upstream 140946 5253693 ~ 5258014 (-) False LOC113537465
XM_026931936.2 mRNA upstream 156763 5269510 ~ 5277092 (-) True LOC113537466
XM_026931937.2 mRNA upstream 156763 5269510 ~ 5275402 (-) False LOC113537466
XM_026931939.2 mRNA upstream 175938 5288685 ~ 5298173 (-) False LOC113537467
TU439054 other downstream 179979 4843329 ~ 4889381 (-) True G370658
XR_004577360.1 other downstream 544576 4524502 ~ 4524784 (-) True LOC117596183
XR_004577367.1 other downstream 606146 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 608045 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 609937 4459317 ~ 4459423 (-) True LOC117596196
XR_004577341.1 other upstream 421668 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 421668 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 421668 5534415 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other upstream 421668 5534415 ~ 5547031 (-) False LOC113537235
XR_004577339.1 other upstream 421725 5534472 ~ 5547032 (-) False LOC113537235

Expression Profile