RNA id: XM_026932202.2


Basic Information

Item Value
RNA id XM_026932202.2
length 3059
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC113537614
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14136218 ~ 14247258 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttggaaaagccgactcttttttttttttttgaggggaAATGGGTGTTTGAGACTGTTGGCAAATTCCCCTTCACAACAATGGCCACGGAGTCGTATCTGGTGCATGAAGAGGCGAGCCGAGGAGCCGTGCTGCCCGAGTGCTTCCTGGTCCCAGATACTTACAGGGATGAGTTCCACCCGTTCATCGAGGCGCTCCTGCCGCACGTGCGCGCCTTCTCCTACACCTGGTTCAACCTGCAGGCGCGCAAGCGCAAGTACTTCAAGAAGCACGAGAAGCGCATGTCCAAGGACGAGGAGCGCGCCGTGAAGGACGAGCTGCTGGGTGAGAAGCCCGAGATCAAGCAGAAGTGGGCATCACGCCTCCTTGCCAAGCTGCGCAAGGACATCCGGCCCGAGTTCCGCGAAGACTTCGTGCTCAGTGTGACGGGCAAGAAGCCGCCATGCTGTGTGCTCTCCAACCCGGACCAGAAAGGCAAGATGAGGCGCATCGACTGCCTCAGGCAGGCCGACAAGGTGTGGAGGCTCGACCTGGTCATGGTGATCCTGTTTAAAGGCAGCCCGCTGGAGAGCACAGACGGAGAGCGGCTCGTCAAATCGCCACAGTGCTCCAACCACAGCCTGTGCGTGCAGCCGCACCACATCGGCGTCTCGGTCAAAGAGCTCGACCTCTACCTGGCCTACTTCGTCCACTCGCCAGAATCAGGACAATCAGACAGTTCCAGCCAACAGGCAGACTCAGACATCAAACCTCCACCAAACGGGCATTTGAGCTTCCAGGACTGCTTCGTCACATCGGGGGTTTGGAATGCAGCCGAGCTCGTACGAGTTTCACAAACTCCTGTTGCCTCTGCCTCAGGTCCTAACTTTTCATTGGCCGACCTGGAAAACCCCGGCTACTACAACATCAACCAAGTAGCGCTTGGCCGACGCTCACTGACATCACCGCCGTCTActagCTCCACTAAACGTAAGTCTATAGATGACAGTGAGATGGACAGCCCAGTGGACGACGTCTTCTACCCCACGCGCTCCCCTGCTGGAACCAGCTCACAGTCCAGTGGCTGGCCCAATGATGTGGATGcagTGCAGCACCACTTGGCCAGCGTTCAGGAGAGGaagataaaacatgaaaatgatggCGTGCAGTTCCCATACCATGGGCTGTCCTCTCCCGGGTCTCTAAAGAAGCCATCGGGGAAATTCGATTTCGGCGCCCTGTCGGCTCAGACGAGGTCCCCCCGCATGGCCTTCACACACCACCCACTGCCCATGCTGGCGGGAGTGAGACCAGgaagtccCCGTGCCTCAGCCTCCGCTCTCCACTTCCCGTCTCCCTCCATCATCCAGCAGTCCAGCCCGTACTTCACCCACCCCACCATCCGCTACCACCATCACCAGGATCCGCTCAAGGAGTTTGTCCAGTTCGTCTGCTCCGACGGCACGGCCCAGCCCGGtgctcagcATACTCCTCGCCAAGCTCCACAGCTCCCAACAGGTTTGTCGGCATCGGAGCACGGGACAACTTTCTAAACATCCCACAGCAGACACAGTCTTGGTTTCTTTGACAAGATCCAtctgagacacacagatacaaagtCTGTAGCTGAAACGTGAAACACAAAGCTAGGTATGGACCGCTATTAGCTAATCACTCACAACCCCCTGTCCCTGATCAACTCAGACCTGCAAGCATCCTGAAACCTTCACCATGAGCCCTCGAACCAGGATTCTGGAAAACTTCCATATGAGTCTTCAAAAACTGCATGATTCTGCAAATCTGAAactggaaagagaaaaaaaaagaaaccaggaAAACAGCAACACAAAGAGCTGGAGTGGAAAACAGATTTGTTTCCATTCTGGATGAAGAAGAGGTTTCATTAGAAGAAGACTTTGTAATGGTATCAAGGTGACCTGAGAATTGACCAATCTTTTCATCcttacttttattcatttttacatccTCCACCAATCATTCAGCGGGGCCAAACCATTCTCCTTTCACTCCATCACAGGTTgttgaaattaaacaattttaaacaattttcctGATATTTTACATCCAgtgaaaatgaagcaaagcgtGAAACCGGGATGGCGTCATCCACATGTTCCACATCAAGCTGCACTTGATTGTCAAGCCTGTCTCAAGCATCTGATTGGACAGGAACTACAAAAGACTCCCCAGCACCCCGCGCTTTGGATTGGCCCATCACGATGACTGACATTATTAAATCATTGGTGTGTCCCAAACACTGGAATGTTAATAGTAATTAGCAGTAATTAAAACACTAAGGAAAGAAAGGTCTGAAACCCATGAGATCTGATCTTAATAGTCGctattttaagtttattttttaagtttaatcAATACATTTAACCGATATACTTTCAACCTAATgcgtctgtagtgtgtgtgctaTTACCAGAATttcaacactgaaaaaagaacagaaacctgGTCACTCGTGTTTATGAACAGTAAATGGTAGATTTAGCTACATGTAGCTAGAGTTAGAGCTGTGTCACCTACCAAGTCCcgcccaccagccagctctcacctatcatacgacagctaacAGCCGAGGAGGGTGAAGTCTAGCACATGCTTTCTCTGAGTCACGTGAAGCCAGCCGTGGCATCCTTTCAAACCGCTGCTCATACTATGTGAAATTTAACACGCTCTGAGGAAaacgctatccgccctcttccgcatacatgagcttacagatgcctacgattggctagtgtctcagtgattgacaggagaaAGAGATAGCAATCTCtttcacccagagagcatggccagttttgctctcttgacccCTGGCCACGGATGGCAGTGGCGTTGCTGTTGAGATCTCGCTCTTCAGGAGTGAGAGGgacattttttaatcatgtaGCTGCTCATTTTCTGTGAATGACCACAATGAACAGAAAAAGCAGACTGATTTCATGTTGCATCAGTTAGGCGTCTTGCTGTCAGACTATATCCCGAGCCAGGCGTGGTCAGACCAAACGCAAGTTAAACTGGCCtggtcgaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445099 lncRNA downstream 10960 14121498 ~ 14125258 (-) True G375871
TU445091 lncRNA downstream 50777 14078964 ~ 14085441 (-) True G375864
TU445042 lncRNA downstream 162124 13972336 ~ 13974094 (-) False klf5a
XR_004577299.1 lncRNA downstream 275444 13853076 ~ 13860774 (-) True LOC117596131
TU444800 lncRNA downstream 299685 13836098 ~ 13836533 (-) True G375615
TU445153 lncRNA upstream 27069 14274327 ~ 14275118 (-) False dand5
TU445312 lncRNA upstream 74926 14322184 ~ 14340390 (-) True G376038
TU445324 lncRNA upstream 135950 14383208 ~ 14455469 (-) True G376048
TU445329 lncRNA upstream 139080 14386338 ~ 14387875 (-) True G376050
TU445344 lncRNA upstream 213025 14460283 ~ 14524503 (-) False meis1a
XM_026932239.2 mRNA downstream 20688 14106206 ~ 14115530 (-) False rnf11a
XM_026932233.2 mRNA downstream 30492 14096792 ~ 14105726 (-) True get3
XM_026932340.2 mRNA downstream 41363 14087985 ~ 14094855 (-) True best2
XM_034299882.1 mRNA downstream 63013 14068175 ~ 14073205 (-) True LOC113537289
XM_026932115.2 mRNA downstream 93550 14036430 ~ 14042668 (-) True tpt1
XM_026932339.2 mRNA upstream 27140 14274398 ~ 14276537 (-) True dand5
XM_026932150.2 mRNA upstream 98084 14345342 ~ 14353154 (-) False prdx2
XM_026932149.2 mRNA upstream 98084 14345342 ~ 14353154 (-) True prdx2
XM_026931791.2 mRNA upstream 114206 14361464 ~ 14370687 (-) True ctsh
XM_034299883.1 mRNA upstream 164114 14411372 ~ 14430546 (-) True aplf
XR_003403798.1 other downstream 97232 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 97620 14038528 ~ 14038598 (-) True LOC113537774
XR_003403797.2 other downstream 98356 14037731 ~ 14037862 (-) True LOC113537775
TU445045 other downstream 105339 14027294 ~ 14030879 (-) True G375826
XR_004577357.1 other downstream 120133 13982745 ~ 14016085 (-) False pibf1
XR_004577346.1 other upstream 27559 14274817 ~ 14275130 (-) False dand5
TU445430 other upstream 435844 14683102 ~ 14684328 (-) False G376143
TU445400 other upstream 449981 14697239 ~ 14712377 (-) False ifngr1
TU446065 other upstream 1208521 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 1208521 15455779 ~ 15458205 (-) False dpy30

Expression Profile