RNA id: XM_026932290.2


Basic Information

Item Value
RNA id XM_026932290.2
length 3681
RNA type mRNA
GC content 0.58
exon number 27
gene id nup133
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15191305 ~ 15208140 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTATTCTCCGCGCCACCGTTCTTCTGAGCGTGACGTAAATCGTGCGCGCGTTTCCATCGATTTGTGCGCGCGCTACATGAACCCGACCAACCCATTACATGAGCCAGTGTAGTTTTAGATTTTCGGCGTTAAAAGGAGTTTTGTGGTTAGAAATAAGCGAGTGAATCAGGATGTTTACTCCCCGCGGAGCCTCAGGCTCGGGACGCCGGCACACGGCGAGGACCGGCGGCAGGAAGAGTGTCAACACGCCGTCAGGGCTGCTGTTCTCCCCGCGCAGAGCTCCCCTCACTCccagCCGAGCGACTCCCACGCGGGTGCAGAGCTGTGCCACGGTGGACTCGGACCATTTCGACGTGCAGACGTTCGGGTCGTCTCTACCTGTCAAAGTGATGGAGGCTCTGACCATGGCGGAAGTGGATGACCAGATCTCGGTGAAGGTGGAGGAATCAGGCTGGGCGTGGATGGTGTGTGGGGAGAGGCTGATCATTTGGAAGATCTGTCAGACTGCAGTAGCGAAGctgtctGTGTGTAAGGACCTGCAGTTATCCCCCAGTGAGTACGCCTACAGCGCTGATCTCATCTCCATCAGCTCATCATCTCCGCTGGAGTCAGCGTCGGTGCAGtcggtgtgtgtgttggccgTGTCTCCGGATGGTTTGGCCCGGTTCTGGCCCAGTCTGGCCCACGAGGGGACGTACACGGAGACGCACGCTGATCTGGGAGGACACCTGTGTAACTACGTGACCGCAGTCAGGGGAGGCAGCTTCATCGTGTCCTCGTACCGCGGGCAGCTGCTGCGGGTGGGCATGGAGGCTTCTGGAAGGCTCTATCAGCGGGCAGTGCAGCAGGGACACGGGATGCTGTCGGGGATCGGACGCCGCGTCTCCAGTCTGTTCGGCCTCCGCAGCCCTCCAGCCGACACAGCCGTGCACAGTGTGTTGTGGGTGCCGGATTCGGGATGCCTCTACACACTCAGTACGTGTGGGTTGAATAAGTGGGAGGTCGGGGACACCACGGAGGTTCAGGTCCTGAGCTGGAACGCCTGCCCGAGCCTCTCCGACAGCATCGCCGACGCCATCTGGggtTCGGAGAGTAACTACGCTGAGCTGAAGGCGGGAGTAAACGTGGCGTATCTGGACATGCAGCTCAGTCACGCTGGCTTGGTGGTGTTGGCTGCAGCATGGCATCCTGCTGATACTCCGTGTTTGGCGTATTTCTGCTTGGTCACGCTCCCAGACACCACGCTACCCGTGTCAGACGAACTCTCTGTAGAGGTCACTAAGTACAACCCGCCGTTTCAGagCGAGGAGGAGCTCCATAAGACGAGGCTGTTGTTGCCGCGGGTGAAAAGTCCTGCAGCGTATCTCTACAACGAGGAGCTGGTGTACACGTGCACCACCGGCGCCGGGCGCAGCGGGCTGCCAGAAGAGAAGCTGACCTTTAACGCCTCCGGTGACCGTATCCGTGGTGGAGGCGTGTGTGCCGACTTGCCAGTTTTCTTCTCCCAGATTAACGGCCTGGTTGCCGTGGTACCCAGAGAGAGCGCCTCCATCTTGCCAGAGACCATGGAGGATTCTCTGTGTACTTCACTGGCTGGGCCTGGCCCTGAGGGGACTCCACTGGAGACACCACCTAAAATGGACACGGTAGCACAAGAGGACAAAACAAAGCTGCTGAAACAAGCCTTCCTGGAGTTCTGCCGCAATCGTGTAATGGAGGCTCAGAAGATGACGGACGAGCTCTTCCCTGACGACGGAGAGGGCGGCGGGAGGGAGCTGGACGCGCTGGTGACTCAGATCGACCTGGACCTGGTGGATGATTATCCTGCGTCGGATCCTCGCTGGGCCGAGTCCGTGCCTGATGAGAACGCCGGCTTCACTCTGACCTCGCTGATTCTGCTGCACCAGCTGGAGGACAAAATGAAAGCTCACCACTGCTTCATGGACTTCCTGCTGCAGACCGGGGTCCTGGACCGGCTCACCTCGACGACAGTGCGCTCGTCTCCCATGGCGACTCGGATGTTGCTATGCGAACACGCGGAGAAGCTGTCGGCGGCCGTCGCGCTGAAGAACCACCACAGCAAGCAGCCGGAGCTGGTGAACGCCGCCGTCGTCGCCACGCTGAGGAAAACCGGTGCGAACGTGCCCTCCAGCCTCACGCCTGCTGACGTCTTCTTCAGAGAGGTGTCTCAGATCTCCTCGATCTTCGAGTCACTGCTGGATGAGGAGGAGAAGTGTCTGAAGGAGAACCCCGTGACCTCAGTGAAGTGGGCCGAAGTCGTCCTCAACGTCAACAACATCATCAAGGACATGCTCCAAGCAGCAGCGCAGTACAGAGAGACTAAAGCGTCCCTCTACAGAGCAGCAGAAAACGCCGCTCCCGAGCCGGAGTACATCCCATGGACAGCCTCGGGCGGAGTGGGCGGAGTTCGTACAGTCATCGCCCGGCAGCATGACGTGATCCTGCGCAGTGTGTATCCTCACGCTGACTCGGGACTCCGTAACGCTCTTAGCGAGCAGCTGGTGGCGCTGCTGGACTCGCTGCTCGGCGGTTACGTGGCTCAGCTCACCTCGCTGCGTCGCCCCGGGCAACAGGAGCGCTACGACGCCCTGGAGATGGAGTACACACAGCGCCGCGCCGAACTGCTCACACCGCTCCtggaGCTGGGTCAGTATCAGTGGGTGGCGGCTCTGGCCGAAAAGTACTGCGATTTTGACATCCTGGTGCAGATGTGCGAGCAGACGGACAATCAGACTCGCCTGCAGCACTACATGACTAAATTCGCTGACCAGaACTTTGCGGACTTCCTGTTCCGCTGGTACATGGAGAAGGGGAAGCGAGGGAAGCTGCTGTCTCAGCCCATCGCTCAGCATCAGCAGCTCGCCAGCTTCCTGCAGGCCCACGAACACCTGAGCTGGCTGCACCACATCCACGTGCAGGACTTCCAGAGTgccCACCACACTCTGTACAGCCAGGCCAACACAGAGACACGCTACTTCAGCAAGAAGAAAACTCTGCTAGCGCTGAGCAAACTCACGGCTCTGGCCTCAGACATGCCCGAGCCGCTGCAGCGCAAGCAGGTCAACGatattgTGGAGCAGGAGCGCTTCCTCCTTCATCAGGAGACTCTTCCCAAACAGCTGCTGGAGGACAAGCAGCAGAACCCAGACACCATGCCTCTACTGAGTGCCCATAACCTTattaatCTGTATATATGTGATGAAAACCGCGGCGCTGATGAGTATGACTTCAAGAAAGCCCTCGACTTGCTGGAATACATCGACAAGGAAGACGCTGTGGATATTACAGCTCTGAAGTGTGCGATTCTCAGCAAAGCCTTGAAGAAAGACTGGAAAGAGAATTGGTCAGCCTCAGACGGCAGTGATGATCCTCTGGAGGCAGCTAGAGACAGCATCTTTGTTAAAATTCTCCAGAAACTCATTCAGGAAGgCGTTCCTCTGCAGGAGTATCTGCCCGATGTGAAGGAGCTGCTGCAGGTAGACGAGTTGGAGGCTCTCAAATCTAAACCCTTCTTTGAGTTCTTACTGAGAGCCAACTACGAGCACTTCGTCCAGTCGCAGATCTGACCCAACGTTCCTGTCCTCTACTCTGCTCTACACTtttctactgtgtgtgttagactcTGTTCTCTCCAcgtgaggatttttttttttttttg

Function

GO: NA

KEGG:

id description
K14300 NUP133; nuclear pore complex protein Nup133

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577285.1 lncRNA downstream 32659 15158146 ~ 15158646 (-) True LOC117596121
TU446010 lncRNA downstream 38185 15152892 ~ 15153120 (-) True G376615
TU446008 lncRNA downstream 43320 15147785 ~ 15147985 (-) True G376613
TU446002 lncRNA downstream 59015 15132017 ~ 15132290 (-) True G376608
TU445995 lncRNA downstream 73412 15117512 ~ 15117893 (-) False triobpa
TU446071 lncRNA upstream 189528 15397668 ~ 15401270 (-) True G376671
TU446085 lncRNA upstream 204284 15412424 ~ 15453792 (-) False dpy30
TU446084 lncRNA upstream 242172 15450312 ~ 15453792 (-) True dpy30
TU446070 lncRNA upstream 252994 15461134 ~ 15462622 (-) True G376670
TU446162 lncRNA upstream 340252 15548392 ~ 15549785 (-) True G376755
XM_026931794.2 mRNA downstream 5233 15181633 ~ 15186072 (-) True acta1a
XM_026932275.2 mRNA downstream 10477 15172738 ~ 15180828 (-) True ccsapa
XM_026932052.2 mRNA downstream 48504 15136233 ~ 15142801 (-) True dla
XM_034299886.1 mRNA downstream 62049 15117733 ~ 15129256 (-) True triobpa
XM_034300392.1 mRNA downstream 78012 15104177 ~ 15113293 (-) True dcaf15
XM_034300172.1 mRNA upstream 28720 15236860 ~ 15243012 (-) False ndufaf5
XM_034300169.1 mRNA upstream 28720 15236860 ~ 15243008 (-) False ndufaf5
XM_034300171.1 mRNA upstream 28720 15236860 ~ 15243001 (-) False ndufaf5
XM_034300170.1 mRNA upstream 28720 15236860 ~ 15243000 (-) False ndufaf5
XM_026931821.2 mRNA upstream 28720 15236860 ~ 15243000 (-) True ndufaf5
TU445400 other downstream 478928 14697239 ~ 14712377 (-) False ifngr1
TU445430 other downstream 506977 14683102 ~ 14684328 (-) False G376143
XR_004577346.1 other downstream 916175 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 1152319 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 1152707 14038528 ~ 14038598 (-) True LOC113537774
TU446065 other upstream 247639 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 247639 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 247639 15455779 ~ 15457083 (-) False dpy30
TU446479 other upstream 709488 15917628 ~ 15920553 (-) True G376956
TU446429 other upstream 725497 15933637 ~ 15942686 (-) False khsrp

Expression Profile