RNA id: XM_026932313.2


Basic Information

Item Value
RNA id XM_026932313.2
length 1754
RNA type mRNA
GC content 0.46
exon number 11
gene id f7l
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6384899 ~ 6392466 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgggatgttcaacaaggacatataggtgtgatggtcaagtgtccataaacttttggagATAGTGTAGGCGGCCTTTTGCACTAAACAGGCTGTTTAGCTCTTTGATTTTCTGAGTTCTTCTCACATGACCTCGTATGTGTGACGAGCGTTTGGGAAGATGAGTGATCCTCTCTTGTGGTTTTAAGACTACAGCTACTACAAAAAAGaccTGATTGCACACTGAGTTTGCAGGCTGAACTTTGATCAAAACTGTTAGACCTGAAATGGAGTCGAGTCCATGCAGAATgaatctctttctcttcatctcatTGCTATGTATCCAAGACTGCTTTGGGGTTCCAGCAGCATCAGTGTTCCTGAATAGGTCTGAAGCTAACCAGATGCTTCTGCATCGGTATCGACGTGCCAACTCATTCCTGGAGGAGCTGAAATTAGGAAATCTGGAGAGGGAGTGTGTAGAAGAGAAATGCTCATACGAAGAGGCCAAGGAGATCTTTTCTGGGCCTGAACAATTGgatGAGTTCTGGAAGAAGTACACAGAGGTGGACCAATGTCAAACTGGCCCATGTGCAAACGGGGCCACTTGTGTCAGTCAGGACAACACTTATATCTGTATATGTCCACCTAGATTCCAGGGACGGAATTGCGACAAAGAAACACTTCCGCAGACTTTTTATGGCTGTCTCTATAAGAACGGAGGATGTGAGCACTTCTGCACAGAGGCTGCAGATTCGGTCCATCAATGTCACTGTGCTACTGACTACAGCTTAGCGGCTGACAACAGAAGCTGTGTGTCACAAGtaCCTTTTCCTTGTGGTAAACCGGTGGTGACAACTGTAGGCCCTAGGATTGTTAAAGGACAATTGTGCCCTAAAGGACAGTGTCCTTGGCAGGCATTACTTAAGCTTGagaatgtgtataaatgtggaGGAGTTATTCTAAACTATGAGTGGATTCTCACGGCAGCTCACTGTGTCTGGCAATACAACCCCTCCCAACTACTAGTGACAGTAGGTGAACACATAATTAATGTGAACGAGGGCACAGAGCAAACTAGAAGAGTGTCCAAAATATTAATCCATCCTCTCTACAACCACACATCCAATGATGCTGACATAGCACTTCTACATCTGCACAAGAACATATCGCTAGGCCCCTACGTGGTGCCCATCTGCCTTCCTCCAGCACAAGGCACATTTTCTCGCGTGCTAGGGGCAGTGCGCACCTCCGTCGTGAGCGGATGGGGACGGCTTTCTCAGCAAGGACCTCTGTCCTCCATTCTTCAGCGGCTAGAAGTGCCCCGGGTGCCACTCGAGAGGTGCCGAGCCCACTCAGGTCTGAGCCTGACCAACAATATGCTGTGTGCTGGCTTTAAGGAAGGAGGACGTGACGCCTGTCAAGGGGACAGCGGTGGGCCACTGGTCACCCACTACAACAACACATGGTTTTTGACCGGCATAGTGAGCTGGGGAAAAGGTTGTGCCCGCTCAGACATGTATGGTGTCTACACCCGTGTAGCAGTCTTTGTAGAGTGGATTATGAACACAATGGCTGCAGAATAAATTAAGGAAGACCAAAGAGCAACAtcttaaaatgtaatatcagaTGATTTGGTGTTGTATAGATCAATACAGACTGTACTGATATTTAGCTTCACTATAAAGCACTGTATTTCCCTATGTATATGATGAACAATGAATTACTATACCATTCAGTTTGTACAACCACTAATAAAATGAATGTTGCTATGTTG

Function

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439992 lncRNA downstream 21748 6362554 ~ 6363151 (-) False LOC113537742
TU439664 lncRNA downstream 380109 6001838 ~ 6004790 (-) True G371134
TU439665 lncRNA downstream 383286 6001179 ~ 6001613 (-) True G371135
TU439687 lncRNA downstream 385425 5998848 ~ 5999474 (-) True G371153
TU439686 lncRNA downstream 386740 5998003 ~ 5998159 (-) True G371152
TU440057 lncRNA upstream 136931 6529397 ~ 6536004 (-) True G371454
TU440098 lncRNA upstream 171383 6563849 ~ 6566945 (-) True G371487
TU440232 lncRNA upstream 416027 6808493 ~ 6815071 (-) True G371595
TU440272 lncRNA upstream 475278 6867744 ~ 6867960 (-) True G371632
TU440266 lncRNA upstream 478106 6870572 ~ 6874420 (-) True pspc1
XM_026932311.2 mRNA downstream 100 6380329 ~ 6384799 (-) True f7
XM_026932064.2 mRNA downstream 4724 6363812 ~ 6380175 (-) False LOC113537543
XM_026932065.2 mRNA downstream 5905 6372375 ~ 6378994 (-) True f7i
XM_026932063.2 mRNA downstream 16011 6363812 ~ 6368888 (-) True LOC113537543
XM_034300225.1 mRNA downstream 21696 6358639 ~ 6363203 (-) True LOC113537742
XM_026932059.2 mRNA upstream 10796 6403262 ~ 6404088 (-) True LOC113537540
XM_034300160.1 mRNA upstream 39543 6432009 ~ 6449919 (-) False LOC113537523
XM_026932037.2 mRNA upstream 39543 6432009 ~ 6449917 (-) True LOC113537523
XM_026931662.2 mRNA upstream 59109 6451575 ~ 6461551 (-) True dusp27
XM_034300341.1 mRNA upstream 76051 6468517 ~ 6500613 (-) True LOC113537739
XR_004577329.1 other downstream 21696 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 351506 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 432586 5942429 ~ 5952313 (-) False LOC113537623
XR_004577339.1 other downstream 837867 5534472 ~ 5547032 (-) False LOC113537235
XR_004577289.1 other upstream 666369 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 666369 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 1325797 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 1520000 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 1928518 8320984 ~ 8329026 (-) False timmdc1

Expression Profile