RNA id: XM_026932340.2


Basic Information

Item Value
RNA id XM_026932340.2
length 1884
RNA type mRNA
GC content 0.53
exon number 9
gene id best2
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14087985 ~ 14094855 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACGGTGACGTACACGGCATGTGTGGCAAACGCTCGCTTCTGCGGCTTTTCCAAGCTGCTTCTGGCCTGGAAGGGGAGCATCTATAAAGTTCTCTACAAGGAGTTTCTGGCTTTTTTCGCCATGTACACCGCAATCAGCATCACGTACAGATTTTTTCTTGTGGACGAGCAAAAGAGGCACTTCGAAAAGCTCTCAATTTACTGCAACCATTACGCCAGCCTCATCCCAATGTCTTTCGTCTTGGGTTTCTACGTGACCGTGATAGTGAACCGCTGGTGGAGTCAGTACACGTCGATCCCGCTGCCGGACCGGGTGATGTGTGTGCTCTCGGGTGGTGTACATGGCGGGGACGAGCGTGGAAGGCTGCTGCGGCGCACACTCATGCGCTACACCAGTCTGTCTGCTCTGCTCATCCTGCGCTCCGTCAGCACCGCCGTCTTCAAGCGCTTTCCCACCATGGACCACGTGGTGGAGGCGGgaTTTATGACAcgggaggagaggaagaagttTGAGAGTCTGCACTCTCCCTATAATAAATACTGGATCCCGTGTGTATGGTTCACTAATCTGGCCGCTGTGGCTCGATGTGAAGGCCGAATTAAAGACAATAACACTTATAAACTGCTGATGGAGGAGCTGAATCAGTTCAGAGAGAAGTGCAGTATGCTCTTCCACTATGACATGATCAGCGTGCCGCTCGtttacacacagGTGGTGACATTAGCAGTGTACAGCTTCTTTCTGGTGTGTCTGATTGGCCGCCAGTTTCTGGACCCGAGTCAGGGTTACCCAGGTCACGACCTCGACCTCTACGTCCCCATCTTCACCCTGCTCCAGTTCTTCTTCTACGCTGGCTGGCTCAAGGTAGCAGAACAGCTGATCAACCCATTtggtgaggatgatgatgatttcgAAACCAACTGGCTCATAGACAGGAACTTCCAGGTATCGATGATGGCAGTAGATGAAATGTATGGTGATTTGCCCAAAATGGAGAGGGATCGCTACTGGAACGACTCGAACCCTCGGCCCCCTTACACCGCCGCCACGCTGTTCGTCCTCCGCAAACCCTCCTTCCAGGGCTCCACCTTCGACATGGCAATTCCTAAGGAAGAGATGCACTTCCAGCCTCTGGAAGAAATCGCTGAGAACCTGGAAGAATCCACGACTCGCAATCACAACCTCGCTCTGTTCAACCGACTCCTCAGCTCCGCCCCTTCTCCCACCAGCATTGTGGGCGGAGCCTTCTGCAGAACCTCTGCTCAGCTGCAGAGATTGACACGTTCAGTCAGCCCTGACTCCTCCTACTCTGAcggagaggagggagagggggaAAGGTACATCGGGCGGAACGAGGGCACAGGAGGATCGCTACCATCAGGTTTAGGAAACGACACCCAGAGCACCATCTGCAGCTGTGGAGGAACCTCCAACACGCATACTCCTCTCTCAGCACAAGAGTTTAACCCGAGCCATGCGATAAacagaggacatgaggaagatGGGTTGAAGAAAGATAAGAATGAGAAAGAATGGACAATGCTGAAGATACCTCCACCTTTAACACGGGTGCTGAAGCAGAAAATGAAGCCAAGGCTTCCCCCTTCAACTAGCACCAACCGCTCCACACCAGACCTCTTCTCCTTCCACCCAATCAGAGACCAGGCCAAGGTCATGACCCCACAGTCGACCAATGGAAATGCACTGTCAGGTATGACTCTCTTGACAGTTCCACAGTGGGCATCTGAGGAACACAAACAGCGCCAGCGCAGCATCAGCATGGGGTCAGACGTCAACTGTTTGTCCAACAAGGCTGAGGATTGACAGAGCGACTTTTCATCGTTCACTTCAGGTTATAAAATGGACAGGATAGAACACAGT

Function

GO: NA

KEGG:

id description
K13879 BEST2, VMD2L1; bestrophin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445091 lncRNA downstream 2544 14078964 ~ 14085441 (-) True G375864
TU445042 lncRNA downstream 113891 13972336 ~ 13974094 (-) False klf5a
XR_004577299.1 lncRNA downstream 227211 13853076 ~ 13860774 (-) True LOC117596131
TU444800 lncRNA downstream 251452 13836098 ~ 13836533 (-) True G375615
TU444799 lncRNA downstream 253005 13832468 ~ 13834980 (-) True G375614
TU445072 lncRNA upstream 11367 14106222 ~ 14180614 (-) True rnf11a
TU445099 lncRNA upstream 26643 14121498 ~ 14125258 (-) True G375871
TU445153 lncRNA upstream 179472 14274327 ~ 14275118 (-) False dand5
TU445312 lncRNA upstream 227329 14322184 ~ 14340390 (-) True G376038
TU445324 lncRNA upstream 288353 14383208 ~ 14455469 (-) True G376048
XM_034299882.1 mRNA downstream 14780 14068175 ~ 14073205 (-) True LOC113537289
XM_026932115.2 mRNA downstream 45317 14036430 ~ 14042668 (-) True tpt1
XM_026932387.2 mRNA downstream 71834 13982745 ~ 14016151 (-) False pibf1
XM_034300346.1 mRNA downstream 71900 13982745 ~ 14016085 (-) True pibf1
XM_026932388.2 mRNA downstream 71901 13982745 ~ 14016084 (-) False pibf1
XM_026932233.2 mRNA upstream 1937 14096792 ~ 14105726 (-) True get3
XM_026932239.2 mRNA upstream 11351 14106206 ~ 14115530 (-) False rnf11a
XM_026932202.2 mRNA upstream 41363 14136218 ~ 14247258 (-) False LOC113537614
XM_026932196.2 mRNA upstream 41363 14136218 ~ 14247258 (-) False LOC113537614
XM_026932200.2 mRNA upstream 41363 14136218 ~ 14247258 (-) False LOC113537614
XR_003403798.1 other downstream 48999 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 49387 14038528 ~ 14038598 (-) True LOC113537774
XR_003403797.2 other downstream 50123 14037731 ~ 14037862 (-) True LOC113537775
TU445045 other downstream 57106 14027294 ~ 14030879 (-) True G375826
XR_004577357.1 other downstream 71900 13982745 ~ 14016085 (-) False pibf1
XR_004577346.1 other upstream 179962 14274817 ~ 14275130 (-) False dand5
TU445430 other upstream 588247 14683102 ~ 14684328 (-) False G376143
TU445400 other upstream 602384 14697239 ~ 14712377 (-) False ifngr1
TU446065 other upstream 1360924 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 1360924 15455779 ~ 15458205 (-) False dpy30

Expression Profile