RNA id: XM_026932363.2


Basic Information

Item Value
RNA id XM_026932363.2
length 3355
RNA type mRNA
GC content 0.48
exon number 4
gene id pcdh8
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7092802 ~ 7096706 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAACAAGGAACCTACATGCACGAGCTGTAAATGGTTTGTGACTAGTTTTAAGGATTACTTACTTCAATTCTTAGGCAGAGATGCAGATTAAAAAGCTGCTACTAAGTTTTAGCTTAGTTGTGATCTTTGCTGCATGGACAGTGAAAGGCACAACAACAAAGTATTACACGTATGAAGAAGACGCACCAGGAACCTTTATTGGAAATCTTTCAACGGATCTGAAGCTCAACCTGTCCGAAGACCCGCACACGAGCTTTCGGTTCATGCAAGAGGGCAACACTTCACTAATTCGCATGCGAAAAAGCGACGGGCTGCTGACGGTGGGAGCGCGCATTGACCGGGAGAGTCTGTGCGGCTCCTCCACGCAATGCATGATCACCGCAGACGTGGTGGTTTTCTCCAAGGAAAAATTCCACCTGATCCACGTCGAGATCCACGTGAGAGACATTAACGACCACGCTCCTGTGTTTCCACGTGGCGAGACCTGGCTCGAGATTTCAGAGAACGCCGCCGTGGACTCGCGCTTTTCCATAGAAGTCGCCACCGACCTGGATGTCGGAAACAATTACATCCAAAGTTATCAGCTCATCAACAGCAGTCATTTTGGCATTGAGGTAGGAACAGGTGAAGATGGCAAGAAGTTTGCTCAGCTTGTGCTTGCGCAGAAGCTTGACAGGGAGCTTGAAGATTCTTACACACTTCAGGTAATTGCAAGTGACGGCGGAAGTCCACCAAAGTCTGGAGCAGTGACTGTGCGCGTAAAAGTGTTGGACTCTAATGACAACAGTCCGCAGTTCGAGCACGACACGATTAGAGTCGAGCTGCACGAAGACGCACCTGTTGGCTTTCTTTTGCTCAGAGTTCAAGCATTCGACCCTGACCATGGAGAAAATGGGGACGTGCGCTACGATTTCGCAGAAGGCGAATCCGGCGAGATCAAAAGCACCTTCGATGTTGATCCTGTTAGTGGAGCTGTGACCTTAAAGTCTTCGGTCGACTTCGAAGCGAGAACATCTTACGAGCTGCACATAAGGGCGTACGATCTGGGCGCCAACTCGGTTCCTTCGACTTGCACGGTCACTGTCGAAATCGTGGACGTGAACGACAACGCACCAGAAGTCACGATCAAGCCGATGGCCTCGAGGAGCGGAGACATGGCGTACATCACGGAGGCGGCGGCGGTGGAAAGTTTCGTCGCGCTCGTGAGCGCCGCGGACAGAGACTCGGGCGCGAACGGCTACGTGCGCGTCAGTCTGCACGGGCACGCGCACTTCAGACTCCAGCAGGCGTACGGAGACACCCTCATGATCGTCACCACGTCTGTTCTGGACCGGGAGAAGATCCCTGAATACAACCTCACTGTCATAGCAGAAGATCTCGGCTCGCCACCATTTAAAACTTTCACCCAGTACACAATCAGAGTGAGTGATGAGAATGATAATGCTCCATCGTTCAGCAAACCCGTCTTCGAAATTTCAGTGATGGAAAACAAAGCAGCAGGATCCTACGTGGCTTCTTTGGTAGCTCGTGATCCTGATGAAGGAGCCAATGGCAAGGTGACGTACAAGCTTCTCGAAAATGAAGTTGAAGGAGTCCCGGTGAGTTCCTTCCTGTCAGTAGACTCAGCTACTGGGACTCTCTACACAGTGAGGCCTCTGGACTATGAGCATGTCAAGCAGATCGAAGTGGCCATCCAAGCAACAGACGGCGGCTCCCCGCCCCTCTCAAGCACGGCTCTGGTCAAGGTCAAGGTTGTGGATGAGAATGACAACACTCCCTTCTTTGTTCACCCCATCCTCATTAATGGCTCAGCAGACATTCCTTTACCATGCAACGCTCCTGCTGGTTACGTGGCCCTGAAACTAGAGGGCCGTGATAATGATGATGCAATGAACGCCGAGCTCTCCTATACCATTATGGAGGATGAGGCATTCCTGTTTGttgtaaatgaaaatacagGTGAGATGGCACTAAAGCATGACCTGGCACTTGTATTCGGAGACACGGTGCATGTCAGAGTGGCAGTAAGCGACCATGGCCGAACGCCTCTTTTCCACACAGCCTCAATCCGCTTTGTGGTTTCGGATGCCATGCCCTTAGAAGAACAAGTGGTGGTGGTTCTTGAGGCAAGTCAAAAACAGGATAAGCCTATTTTTGATGCTTCCTTCATCATCATTGGGCTTCTGGGTGCCGCTTGTGCTGTATTGCTGGTCGCCATTGTGGCTGTCGCGTTCTCACGCAGGAACTTCCAGAGGAATGTCAGCTCCATTAGCAAAATATCTGGGGGAAACTTCCGAAAAACTCAATTACCAACCGACAGCATTGACTCAACAGATTCCAACAGCCTCTCCGGAGGTAGTGTTACAGTCACTGAACAGATTTCATCTTCGAGGGATGAATCATCTTTCTCATTTGAAGATGAACAAAGCAGGGATTCTGACAGTAAGATGTTTCGACCTCTCCTCACTAAAGGTCATTTTGAGCCAGTTTCCCTTTGGCAAGGAGACAGATACACACTTCAGATGAGTGAAATCGGATCTGTCGATCAGACGAGCATGAGGGACAGTGGCAAAGGTGACAGCGACTCCAATGACAGTGACTCTGACAGCGGACAAGCCGGTCAAAAAATTGCTAACATTGGCCACCAGCGAGCTAGCAGTTCCTTGTACACTGCACCAATGGATGGAGCTGGAGCATGCAGAACCAGAGAGATTCCCACACACACTACCAGCACTCATGTGGGCAACAGTGGGTACACTGTAGCATATCGGACACTGGGCTACGGCCGCCATCCAGCTGCCGCCAACCAAGGACCATCCTTCAGAGACTACAGTTATAATGCAGTCTTCAGCCAAACCAAAGATTACCCACATGTCCCTGTGTTTCACAGGATGGGGACACAACCCCAGTATTACTATCAGCATCATGTGCACAGACAGTTAGACAAACAAGCTGTACCTCCCAGAGAGCCGATCACAGACATCATCAGCATGCCTGTAGCAtccttttaaaaagaaacaaaaaaacctcaatGATTTCGTCACAACACATGAACTTCACATTATGTTACTTGTTTAAAGATTCTGGGCTTAATTTGAACTTTAATTCGATcagtgctgtttttcttcagtccTGTAGTAGTCCTACTTTATTTCTGGtctttatttatacaatattGTAGTAAGATCAACACAGTAACTTAGTTCATTTGACATAGATTGTCATAGAAgctgttgtattattatttttatttgtgtaaataacTTATGTAAATAGTTGTAAGTAAAACATCTCGTATTTATTGACACCTTGTGTATATTCCTGTGtaattttgaataaatgaatgaaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440274 lncRNA downstream 191459 6891766 ~ 6901343 (-) True G371634
TU440265 lncRNA downstream 211022 6879870 ~ 6881780 (-) True G371625
TU440266 lncRNA downstream 218382 6870572 ~ 6874420 (-) True pspc1
TU440272 lncRNA downstream 224842 6867744 ~ 6867960 (-) True G371632
TU440232 lncRNA downstream 277731 6808493 ~ 6815071 (-) True G371595
TU440449 lncRNA upstream 54732 7151438 ~ 7153159 (-) True G371787
TU440456 lncRNA upstream 86470 7183176 ~ 7183386 (-) True G371793
TU440604 lncRNA upstream 260605 7357311 ~ 7378538 (-) False LOC113537388
TU440608 lncRNA upstream 314275 7410981 ~ 7415018 (-) True G371929
TU440643 lncRNA upstream 371083 7467789 ~ 7468460 (-) True G371964
XM_026932060.2 mRNA downstream 2272 7084926 ~ 7090530 (-) True LOC113537541
XM_026932089.2 mRNA downstream 9948 7069178 ~ 7082854 (-) False si:ch211-91p5.3
XM_026932088.2 mRNA downstream 9948 7069178 ~ 7082854 (-) False si:ch211-91p5.3
XM_026932087.2 mRNA downstream 9948 7069178 ~ 7082854 (-) True si:ch211-91p5.3
XM_034299966.1 mRNA downstream 24333 7058835 ~ 7068469 (-) False LOC113537271
XM_026931957.2 mRNA upstream 59874 7156580 ~ 7181482 (-) False sugt1
XM_026931956.2 mRNA upstream 59874 7156580 ~ 7181481 (-) True sugt1
XM_026931775.2 mRNA upstream 88096 7184802 ~ 7201325 (-) False LOC113537349
XM_026931777.2 mRNA upstream 88096 7184802 ~ 7195366 (-) False LOC113537349
XM_026931779.2 mRNA upstream 88096 7184802 ~ 7195266 (-) False LOC113537349
TU440391 other downstream 24271 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 24335 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 729599 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1059409 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 1140489 5942429 ~ 5952313 (-) False LOC113537623
TU440780 other upstream 621557 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 815760 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 1224278 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 1332905 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 1494701 8591407 ~ 8606840 (-) True tsga10

Expression Profile