RNA id: XM_026932385.2


Basic Information

Item Value
RNA id XM_026932385.2
length 7990
RNA type mRNA
GC content 0.42
exon number 27
gene id sorcs3
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9306733 ~ 9547257 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCTTAACTTAACCTTTCTGCTTAAAAAAATCAGCACTGCTTGAACACGGAAAAacgcaacaaaacaaaacaaaacaaaacaaacaaaaaaagcaaagaagtATCACGCgcgcatctctctctctctctctctctgtctctctctctctctctctctctctctcctccctggCCAGTGTTCAGCTCCTCCCCTCTGTGCTGCCTTTACTTCATCAGATAGCTGAACGTGAACAGTTTAGCTGAAGAGCACTTGCCTAAAAAACCAGGAGGGAGCGCGCGCTCAGCATCCACGCTACAAACGGATCCCAAGCACGGAATTTCGGCGTCCCAAGCCCCGGTTTGAGCATGGACCACTCGTTATCTGGCATGTACTTGACTCTGTGCACTTGGCTTGTTTGCTCTTTGCATCTTTGTGCCATTACCAGAGCGGAGGTAACTTGCGCCTCGTGCCCGTTACCCACGCTTGTCAAAACTGGGGATGTCCAAAACCATGCACGCGCCATGACTCGCGCGGCGGCTGGGAAATCACCTGTCGGTTTGGCGCGCACGAGACTGCAACCGGGTCTGGAAGGAGTTCATGAGTTGGGGAAAGACGCGAGCGCGAGCCGCGCGCCAAACTCGAGAGAAGTGGAAGTGACGGCGCGCTCACCCGAACCGGGCTCCGGTGCAAAAACACCGCCCGAGCAAACTGCACGGCGACTCCGGGACCGTGAGGAAGCAGCTAACAAAGCCAGTGCGTCGCTGAGACGCAGAAGGAGCGCGGAGCAACTGGATGAATTTGGCGCAAGCGCGCGGAGCGGAGATTCCGCAGAGTCCCCGGATGCGCTGCTGTTTGTGGATGGACAGAAACTGCGACGCAACCGCGACGAGGGAAAAGTGGCCACTTCCAGATCGGAGGATCCCAAAGTGAGCAGTAGCACTTTCGCCCTGGCTGGAGACTCCGCTCACAACCACGCTGTCGTTTACTGGACCGGACAGAACAGCAGCGTGATTCTGATCCTGACCAAGCTTTATGACTTCCACTTGGGCAGCGTCACTGAAAGCTCCTTATGGAGATCGACAGACTATGGCACCACCTATGAGAGACTGAACGACAAAGTGGGAGTGAAGACAGTCCTGAGTTACCTGTACGTCTGTCCCACCAACCAAAGGAAGGTAATGGTGTTGACAGACCCGGAATTCGAAAGTAGTGTCCTCATCAGTTCTGACGAGGGTGCTAGCTACCAGAAATACCGTCTCAGTTTCTACGTCTTGAGTCTACTTTTTCACCCTTCACAAGAGGACTGGGCTCTGGCCTACAGCCACGACCAGAagCTGTACAGCTCATTTGACTTTGGACGGAAGTGGCATCTCGTTCACGAACGAGTGACCCCCAACCGCTTCTATTGGTCTGTAAGTGGTCTAGATAAGGAGGCCGATCTGGTGCACATGGAGGCGTACACTTCTGATGGACATTGTCAGTATATGACATGCAGGGCCCAGGCTTGTTATGAATCGAGCAGGACGTTCCCATTCCCCGGCTACATCGAGCCAAACTCGCTGGTGGTTCAGGATGACTACATTGTCATTCAGGTCACCATGTCTGGGAGAGCCTCTTATTATGTGTCTTACCAAAGGGGACCTTTTGTGCGCATCAAAATACCTAAATACTCCCTTCCAAAAGACATGCACATCCTGAGCACAGATCAAGGTCAGGTTTTCGCCGCTGTCCAAGAGTGGAATCAGAACGACACGTACAACCTGTACATCTCAGATCCTCATGGTGTTTACTTCACTCTAGCTTTGGAAAATGTCAAGACCACCCGAGGTCTTGGGGGCAACAGTATGATAGACCTGTATGAGGTAGCAGGAATCAAAGGCATGCTGATTGCTAATAGAAAGCTGGACAACCAGGTGAAGACGTACATCACTTACAACAAGGGCCGGGACTGGAGGCTGCTGCAGGCACCCACTACAGACCTGGAGGGGAATGAGATTTACTGTGTGCAGCCATTTTGTTCGCTACACCTACAGCTGCAGATGTCAGAAAACCCTTACGTCTCTGGAAGTATTATCACCAAGAACTCGGTGCCTGGAGTGATCATCGctatagGCAATATGGGCTCTGAGCTCTCCTACAATAATGTTGGAATGTTCATATCATCAGATGCTGGCAATACTTGGAGACAGATATTTGATGAGGAGCACAATGTTTGGTTCCTGGATAAAGCAGGAGCTTTACTTGCAGTCAAGCAGCCCACAGTTCCCACAAGGCATTTCTGGATCAGCTTTGACGAAGGGAGACAGTGGACACATCATATTTTCTCAGCCATGCCTCTGTTTGTGGATGGCGTTCTGGTCGAGCCAGGCATGGAGAATCAGATTCTGACGTTTTTCGGACACTTCAGCGATCGCTCTGAGTGGCAGCTGATCAAAATCGACTACAAGTCCCTGTTTACCAAGCGCTGCGCAGAAGGAGACTACCAAACGTGGCACTTGCACAATCAGGGTGAGCCGTGCGTAATGGGCCAAAAGCAGATCTTCATCAAGCGCCGTCCGGGCAGCTACTGCATGATGGGAAAGGACACCAGGATCCTATCGGCTGAGCCTTGTATCTGTAGAGCGCATGATTTTGAGTGTGATTATGGCTATGAGCGGAGAGGAGATGGTAACTGTCTGCCTGCGTTCTGGTTCAATCCTTCCACTGTATCACGGAGCTGCAGTCAAGGCCAGAACTACTTCAACAGCACAggTTATCGCAAAGTAGCAGCGAACAACTGCACCAAAGGGGTGAAGGAGATGTACACAGCCAGGAAACAGCAGTGTCCCAATCGAGCTCCTCGAGGACTGCACCTGACAACCCGTGACAGCACCCTGAAAGCAAATATGGGCTCCAACGTCACCTTTATAGTACAACTGGAAGAGGGAGACTCAATGAGGACTAATATCCAATTGGACTTCGGGGATGGGACGGCGGTGTCCTACTCTAACCTCAGCTGGACGGAGGAGGGTATCAGACATGTGTACCGCAGCACAGGAATCTTCCGGGTCACTGCCATCGCTGAGAACAGCCTGGGATCTGACTCCAGCTCCCTATACCTGCACGTGACTTgtcctGTTGAGCATGTCCAGTTGCTGGCTCCATTTGTGGTCATTAAGAACAAGGAAGTGAACTTGACTGCAGTGGTCTGGCCGTCTCACTCTCGAACTCTCACCTACTTCTGGTGGCTGGGGAACAACACCGAGCCAATGATCACTCTAGAGGGCAGTATATCCTACGTGTTTCCAGTGGAGGGGACGTACATGGTAACGGTGCAGGTCTCATCATCCAGCTCCATTCTTCAAGACACCAAACAAATCGTTGTGCAAGAATTCTTTAAATCCCTGCTTTTATCGTTTTCTCCGAATCTGGACGAGGCCAATCCTGACATCCCGGAGTGGAGGCACGATGTAGGCAGGATAATTAAAAAGGCTGTGCTCCAAaTAGCCGATATTCCTGCCGAGCAGCTCCTGGTGGCGGTTTTCCCTGGACTTCCAACAGCTGCTGAGCTTTTCCTGCTTCCCAGCAAGAACCAGTCAGACAGCAGGAAAGGGAGCGAGGAGGATCTGGAACAGATCTCAGAAATCCTTGCCAATGCATTGAACCAGAACCTGGTAGAATTTGAGCTGAAACCAGGATCCGGAGTTATCGTTTACATCACACAGCTAACATTAGcTCCACTGGTGGACTCAATCCCTAGACACAGCAGTTCTGCCATGCTGATGCTCCTCTCTGTGGTGTTCTTGGGTTTAGCTGTGTTCCTCATTTACAAATTCAAGAGaaaaattCCCTGGATTAATATATATGCTGAAGTGAACCAAGAGAAAGAGCAGGAGATGATCGGCACAGTGGGTCAGAACGACACAACACCCAAAATTAAGCTCAGCGAGTTCTCCAGCCCCAAAGAGCTTATGGAGAAGGACTTGGAGGTCCGTGTTAAACGTGGAATGATCAATGCCTGCGAAAGCACAAGAGAGATTCCCAACTGTACAAGTGTCTGAATGAAACAAGACAAGTTGGAAGTGCAGTGTAATCAAGTGTACAGAAGTGTTGTCATTTTGAGAGTTCTGTATGTTCTCCTTCATTTTGTAATTTCAGAAACAGTCATTGTTAATAGTTTTCTAAGGACCTCGTTTATACAGATTTGCATGGATGTCTTGTTTGATAAGATCTATGCGGAAAATCTAAATGCTTAATGAGACCTTTTTAATGATGATTAAAAACATTGCTTGTTTTGGAGAGAAAATGAGGCGCAGACGCAAGTTGAGAGCAAACTAGTCTTTTGTCCTTCTtgactatataaaaaaaatctgtaacttTGCAATGTATTGATGGCAAAATACACACTTCATAGCAGTTTCATTATGTTAATGACATCTATTACAGAATcagaatgtataaaatatagctGTAACATGAATATCAGTTTTTCCAGAATTTCTGTTACAGAATTAACTGTTCATTGTTTCAAACATcggtcattttatagaaggtaaatCCTGTTGAAAAATGTTTAGTTGGCAGGGAAAAGATGCTGTGCTAAGTCCAGAATATCTGTTTAGTCTTGTGCACAGGAGTTGCGTGAGTTGTTGGGCTGCAATGTAAATTGATCATAAAACCTTATTAGTTTAAGTGAGTTTGACTAATGAGTTTTTTCAAAGAGTTTTTTGTGATCAATTTTTCTTAGTTTTCAGTAGATAGCCAAAGTCATCCAGGATTTGTAATGTTGCTCATTTTTCACAACACAAATAAGCAACTGACAGCAACACAACATCAAATGAAAAAGACCAACATCCATATAGGCAGGATTTGTTAACAAgattatatataacatataatatgatataacaTGAGAATTTAAATAATGCCATAAGAAGCTTTGATGCTTCAccttaattacatttttttttcatgaagcTATTCAGCTATAAAGATcttaaaaagaagagagagacagaagcagTGCATTGCTGGAAAGTAAAAAGCTTAGACTGGCACTTGGCAAAGATCTTAGAAAATAAACTATGTTGAATATTTCTcagatatgaaatatatgtattattattaacttctccagaaatatttattattctctatctagatttttttcttaagtaaattttgccccattttctcccaatttggtcatttgacAAATCCCgcccactagctaactctcaCCTACCACAGTGATATAGTGAACGTTCTTCTTTTGCACCATTtgggaacctttttttttttaataacttcttttagaaaatgaatgaacttgTCTTAATGCACAGGCATataattttgctttgttttaggAAATAATGCTTAAAGGCAATCAGTGCTGTACCAGTTTCACTGGATCAAGCTATAATAATATAAGGGCAATTCCAGCATCATCGATGTGACATTTGCACTCACAATGGCAAACAAAATTGCTAAGGATCATTGAATCAATTTGCATATATTGTCATTTATCATCTTAAAGACAGTGCAGACAACTCTTAAAACATCATGTATCGATTTACATGTTTCAAATACATAGCAGTTTATCAGCATTATGGGTGTGACATCAAGCAGACACACTTTTGTAGGAGACTACACATTTTCTACAGGCTCTGAATTGCAGGTCTATATGTATAAACATGAAACAGActtgaatgaacacaaaaaagaaataaaattgtgaTATGGCTTGTCTAAACGAGTACTCCATATATTTGATGCATAAACGATGCAATTTTCTCTATAAGAGAAGTTACATACAGAAAAATATAGATATAAGTGAACATTTTTCCATTTGTGTGGAAAAATGCACCATTTGTGTGGAATTGCCCAGTGATAGGTTCAATCTTATAaacatttttgaatgtttttataataagaaatatatgaTAGTTTGGATTGTACTCAagaacaatataaataaatgtggaatTGCTTCCTTGTTCACCATTTTCAAGGTGAGATGAGAATTTTGGAGGTGAGCTAGCTACAAAATTCTTTATACTTGAGAGATAACAATTGGCTAGCAGTGAAAATACTTTAACTCTAGAAAGAATCTAAGGAGATGTGGCATTATCTGAGTGCTACTTAGTggcacttattttatttatttaatcatttttgccAAAGCCATTACCATCTAGGGAAATACATACATAGTTTTGATATATtgcttaatatatttatatatatatatatatttaatatatatcatTAATATTGCTTTTGTTGAAGTTTAAGGCCAGATCAACAATAAAAATTCACATTAACAACTTTATCAATTAATGTCAAGCACAaacagggaaaaataaaatcaaagtaTATAGTTAGCAAAAACAAACTAGCATATATCACTAGCAGAATGCTAGGAACAAGACTTCTTTAGCCTGGGTCATTTATGGGGAGCATGCTGATTGGGAATAGGTGTTGGTGATTAGTAGTCTTGGGGAACTAGAACGAGGTAGCTGATCATGTGACAGGTCATGTGGCTGGAATTGTGGTTTGTTGTTTGGCTGAGGATTCTGGGAAAAGGCCTTATTTAATTGCAGCCTTAATTAATCATTCACATGCATTTGTATAGCAATATACTGCTGTAAGTATTATATATAGTTAAAGTCCTGTAGATTAACAATAAGAATACTGTATTTGAGTGCGTATTTAATTGGATGTGATGCCAAAACATTGATTGCTGTCAAAATTAATATGCTTTAAATCCTTTATTAAACAAACTGAAAGACTCTCATGCAATGGCAGCAGCACTGGAGATTTAGTTCATGTCATCCatctttaacactttttaattttattgttgttatctttacaggattttttttttgtcttgtttcatAAGATATTAAGTGAACGCCTTACAGAAACAATGCCTTATTGCCATATTATGTGTTTTGCCATCAAAACATGTCTACTTCAAAACACAACTTAATTCCTACACATTAAAGCAAAGGCTATTGTATAAAGACATATGATAAAGTATTTCTATCAAAATGATAATCAGTTCtattgttcatttgttttctatCAAATATTGTGTCATGTCTCCCAGGGAACAGCTTTGAACTGTATCATAGTCTCGATAGAGCTTCAGATTTTCATCTCTCTGTATATACAGCGCATATGCTGTCACTTTCACATGCTCCTATTGTAAATATAGTGGCAAAGACTAAACTGTGAACCttaacacagtaaaaaaaagtgttgagtTTACTTTTTATGGAATCATTGATCGTTTTGACAATGTCCTTGACATGTGCATGTTATTTACAAGGACGTGATTTACAGTATGTGTTGTAGATAGTAAGCAAGCACTGTAAATAGTTCTTTTTTAGTCAACCATGTTGGGAGtcagttttgtttgtaattttacatattacatatctgGTCTTATATATCCTGGTCTTTCCCTGTTGCTCACCTCTTTGACATAGAAATAAGCGAAATTCTGTTTAGCGAAAACTATTTGGGAAACAAgggcattttaaaatgtaaaataacagcagtaaattaaacatttacacaaataagGAAATACTTGATCAGTTAATTTTCTGTGTATTGCTAAACATTCTGAACTATTACTTCTACTACTGTTCTAGTTTATATGGTTTAATGCAAAAGTATCAAATTTTCTATGTGAAAGAGGTAATGTTTAAGTATCATTTACAGATATATTTACACTACTATAAAATTTTACAAAGTTTTACAAAGAATTGAATGCCCCAATACTTCAAGTAGCCATCACCTAATAAGCCAGTTGTTTGCCCATCTAGTATTCACATTCATcatttacaccaatcagccataacattaaaaccactgacaggtgaagtgtaTAATATTGATCATCTCACAATcctacaatggcacctgtcaaggggtgggatatattaggcagcaagtgaacagtcagttctcgaagttaatgtgttggaagcaggataaatgggcaagcataagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403741.2 lncRNA downstream 341112 8963585 ~ 8965621 (-) False LOC113537261
XR_003403742.2 lncRNA downstream 341305 8963585 ~ 8965428 (-) True LOC113537261
TU441552 lncRNA downstream 518592 8775032 ~ 8788141 (-) True G372742
TU441285 lncRNA downstream 862668 8428604 ~ 8444065 (-) True G372522
TU441222 lncRNA downstream 1039544 8261435 ~ 8267189 (-) True LOC113537489
TU442113 lncRNA upstream 212484 9759741 ~ 9759949 (-) True G373288
TU442117 lncRNA upstream 216362 9763619 ~ 9764526 (-) True G373292
TU442121 lncRNA upstream 219782 9767039 ~ 9767482 (-) True G373296
TU442140 lncRNA upstream 238726 9785983 ~ 9786861 (-) True G373310
TU442143 lncRNA upstream 239005 9786262 ~ 9786861 (-) False G373310
XM_034299956.1 mRNA downstream 458569 8835487 ~ 8848164 (-) True caly
XM_026932095.2 mRNA downstream 508485 8796367 ~ 8798248 (-) True msx1b
XM_026932249.2 mRNA downstream 554483 8743452 ~ 8752250 (-) False taf5
XM_026932248.2 mRNA downstream 554483 8743452 ~ 8752250 (-) True taf5
XM_034300038.1 mRNA downstream 566316 8710383 ~ 8740417 (-) True pdcd11
XM_026932141.2 mRNA upstream 49757 9597014 ~ 9705826 (-) True cfap58
XM_034299861.1 mRNA upstream 259915 9807172 ~ 9823708 (-) True sh3pxd2aa
XM_034299863.1 mRNA upstream 331656 9878913 ~ 9918779 (-) False LOC117596103
XM_026931714.2 mRNA upstream 372565 9919822 ~ 9927977 (-) True stn1
XM_034299958.1 mRNA upstream 372565 9919822 ~ 9927674 (-) False stn1
XR_004577317.1 other downstream 699893 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 874309 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 977707 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 1390412 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 1581938 7718263 ~ 7724795 (-) True G372086
TU442201 other upstream 331586 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 1324027 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 1925623 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 3761781 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 3776825 13324082 ~ 13324173 (-) True trnar-ucu_15

Expression Profile