RNA id: XM_026932391.2



Basic Information


Item Value
RNA id XM_026932391.2
length 2162
RNA type mRNA
GC content 0.46
exon number 4
gene id wbp1lb
representative False

Chromosome Information


Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12563004 ~ 12570298 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GTGCAGATGTTGTGCAACAGCTGGAAGTTCCGCGCCGAGAGGCACGCTGTTCCTCCTGAGACAGAGCAGCTATGAGCTGGGAGGAAGGAAGGCGGCGCATGTGCTCGCTTTTCACGTCTCTGACACGCGCAATGAACAAACCATAACTCTGATCTCGATGTTTGCGCTTTTACGAAACGCAGCGTGTTGTTGACAGCTGGATGTCGTGTGCAGAaatgggtttgtttttttacacagcTGGAACTGTCAGTCCCACAGAGGCGACTCTCGACCAGTCACTGCAATGTGTTGGGGAGAATAACCAGAGCTACATTTGTGAGTCAGGGCACTGCTGTGAAGACCTGCAGTGCTGCAACTACTACTATGAGTTATGGTGGTTCTGGTTGATGTGTGCTATTATCTTCATCCTGAcctgttgctgtgtgtgtcGTCACCGCCGCGTCAAGCACagactgcagcagcagcagcgacaGCATGAGATCAACCTGATTGCCTACAGAGAGGCTCGCAACTACACCTCACCTCCATTCTACTTCAGGTTTCTACCAAGCAATCTCCTCCCTGACTATGAGGATGTAACAAATCATCCTCTCACCCCACCACCTCCCTACTGTAACTTAAACACCGGACCGCCAGCTTGTACCAACAGTGACCAAGAGGAGGCACAATGTCCATCCACACAAGCCACTCCTATGCCCACAGCATCGGCAGCACTGTGCTCCAGTCCTGACATAGTGGGGCTTGAGAACTCCAGGGAGAATCAGCAAAGAGATGATGGGAAAGACAGGGAGACCATACTGAAGCAGGACATGGATCACAAGGACCAGGAAAGGGATGTGGAAGTGCCTGAAGAGGAGACAGATGGGCTCATGGGAAGACGGCGCCACTTTACAGGCGACTCTGGCAttgaagtgtgtttgtgcagcCAAGGAATTGAGAGCGACAGACCCAAAGAGCTTGAGGAGCTGTTAAGCAATGAAGGCCACAGCAGCCCAATGGAGTTTTGCGATGGCTGTGGAGCTAGAGATGATAAAGACAATGAGCAGGGGACAGAGCTTGACGCATCACCACGACTACCACTATCACCACAGCTCCATCCTTCCTGCCTATATTTGCATACCATTAAGGAGCCAGAGGGGCCACAGGAGTGTCAGAGCTGAGCGGGATGATATCAAACATAAAGGAAACAGAGACCCAACAGTACACACCATTTTTTGTGGAtggtgtatacagtatgtgtaagcCTTTTGACAACCTGTTggttgaatgattttttttttttgtagagacAGCTGGGCTGGATGGGGGAAAGAATCATGGTGAATCCTGAGCCTATCCTAGAAACACTGGTttcgaggtgggaatacatcctgaatAAGGAATATGTCCTTCACAAGGCGtccaacacaaaacacactcattcacacctaggggtaatctggattagccaatccacttactggcatgttttgggaggttgAAAGGAAGCAGAGGTATAAGCAGTGACTTGAGATAATGACAAGATCCAAAGATCACACAAGATCAATAGAATTGTTCGGTTTAATGAGCGTTATTATGTTTTGGTGAGTGCAAAGTTTGGTGTGTGGCCATTCATTGGGGCAAGGATAAGTTCAAGTAGCTGTTTCTCCACACCACAAGTCTGATTGGGCTGAAATTTGGTGAAGCCTGGGATACTTAAAAACATGGCCAACATCAGCCAGTTggctttcagcaggcatttcacagGGTTAGCATTGAGCAATCATAAAACTTGAACAATCATTTATGGCCACTTTTGTTTTATgtaacttggcaagaactgaCCTATGGGAGTGATATTTGCAAAGGATGCTCGGACCCCGCAGATCACCCCTTGTAGTTATATTTACATGTTGATTTTTGTCAAGCTTTGTCATTGGGGCCAGTTTTAGTAATTCAAGCCTTGAAGTGCTTGTACATGAAAGCAACTTTTACTTTAAACCCCCATAGGTAAATGATAAAGTATCTTAATATTGTTCTAGCTAGACTAGCCTCTGCTTTGCACATTTTTCAATCTCTCCTGCCAAAACAGAGAACTTGAGATTGTGattgatttttttgcattatctTGCATGAATTATAGCAAAGTGaccaaaaaagtaaataaaagttatGAAAGTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU444111 lncRNA downstream 2179 12560601 ~ 12560825 (-) True G375018
TU444089 lncRNA downstream 36185 12526620 ~ 12526819 (-) True G375001
TU444050 lncRNA downstream 121465 12441321 ~ 12441539 (-) True G374963
TU444049 lncRNA downstream 125318 12437356 ~ 12437686 (-) True G374962
TU444048 lncRNA downstream 125784 12436772 ~ 12437220 (-) True G374961
TU444126 lncRNA upstream 14147 12584445 ~ 12584659 (-) True G375027
TU444129 lncRNA upstream 14862 12585160 ~ 12585597 (-) True G375028
TU444162 lncRNA upstream 54833 12625131 ~ 12625619 (-) False LOC113537246
TU444203 lncRNA upstream 125717 12696015 ~ 12697218 (-) True G375097
TU444227 lncRNA upstream 171127 12741425 ~ 12741652 (-) True G375119
XM_034299940.1 mRNA downstream 16581 12536497 ~ 12546423 (-) True as3mt
XM_026932278.2 mRNA downstream 27773 12502681 ~ 12535231 (-) True cnnm2b
XM_026932279.2 mRNA downstream 27773 12502682 ~ 12535231 (-) False cnnm2b
XM_026932408.2 mRNA downstream 91393 12465957 ~ 12471611 (-) True inab
XM_026932160.2 mRNA downstream 142449 12418468 ~ 12420555 (-) True lbx1b
XM_026932144.2 mRNA upstream 741 12571039 ~ 12578393 (-) False poll
XM_026932142.2 mRNA upstream 741 12571039 ~ 12578393 (-) True poll
XM_034300265.1 mRNA upstream 15428 12585726 ~ 12592448 (-) True fgf8b
XM_026932069.2 mRNA upstream 38755 12609053 ~ 12622350 (-) True slc2a15b
XM_034299957.1 mRNA upstream 54753 12625051 ~ 12630403 (-) True LOC113537246
trnar-ucu_14 other downstream 1090033 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 1690458 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 2644264 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 3956164 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 4130580 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 738740 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 753784 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 755219 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 755695 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 757754 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile