RNA id: XM_034300007.1


Basic Information

Item Value
RNA id XM_034300007.1
length 3591
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC113537761
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10217608 ~ 10236158 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTGCTTCCAAATCGGAATCCGTGATGGCAATTTAAGAAGCCACACGCCGAACTGAAGGACATGCAACATGGAGAGACCGTCATTGGAGAAGGGGATTAGAGCTACACAGAAGTCAGTTGGCACACACAGGCTGGTGAATCATCGATGCTGAGCAAAAAAGCCACTTCAGCGTCAgactgagagatggaggaggtCAACACGACAACATGCCTGACTATGGAGAGAAGGAGCAGCGATTTAGTGACACCTGCGGGTCAAATGATATCACTACATATATACACTAGATCAATCTTGTTGGAGACATGGTGGGGTCATTGTGAACTTTCCATTGCATCCTGGGACAGTGTCACCTACTGAGGGTCGGAGATGAAAGGATGAGACAGAAATGATGGCTTACCTTGaaaagaaaactggagaacAACAGCAGCCTGccacaaagagagaaaacactgtGGGCAAGACCTCTGTTAAGGAGGAGGTGGAGTCAGGTCACTTTGAGGCAGATACAGAGAGCGAGGACCTCCCGAACATCAGGACCCCCAGTGTGATCAACGTGAGCCCCTTCGGCAGTTCAGTAGGAGGCTGGGGGACCTCCAGACCACCGCAGTACTTCGACCCCAACACCCATGACCCACATGTTCCTGTTGGCTTTCCTGCTGAGGCATCAAATCCACTCCCcatctacaaaacacacaccgtTAAGACATTTTATAATTCACACAGGACGTCCATTATTAAAGTGCGGCCCTTCATCCATGGAGAAAATCTATCAGACTCTCAGTCCATGCGCTGGCCAGACATACCACGCAAgctgctgatgctgctgatAATCATTTGTTTGTTAATAGCAGTGACTCTGGTTCTAGGAATTGGTCTGGGAGTGGGTTTGAGCTGCTCAGGAAAATTCCGCTGTGTGTCTACAGCTAAGTGTATCAAGAGATCCGCTGTCTGTGATGGAGTCAAAGACTGTGGCGAGGGAGAGGATGAACTCAACTGTGTGCGAGTGAGTGGGAGACACTCCGTCTTGCAGATTCACAGTAGGGGCATatggagctctgtgtgctggGAGAACTGGAGCACCAATCTGGGATTCTCTGCCTGCAAACAGCTCGGCTACAACAGTTATGTGAATTCCACTTCAATCCCTCTCTCTTCTGTTGAGTCAGCCTTCACGAAAAACGTAGTGATGATTAGTTCCCGCTTTCCAATACATCATCAAACCTTCAAAATTCACAACACCTCCTTCCTCAGAATGGCTCAGTGCATATCTGGGTTGGTCACGGTACTTAAGTGTATAGAGTGTGGTACCAGACCTGGGTTCAGGACCCGGATTGCAGAGGGAAATGTATCTCTCTCTGGGCAGTACCCATGGCAGGTCAGCTTGCAGTACCAGAACCAGTATCTCTGTGGAGGATCACTAATAACCAACCAGTGGATAGTCACTGCTGCACACTGTGTATATGGCTTTGCTAATCCCGCTTTCTGGACAGTTCAGGTGGGCCTCACAGACCAGCCTCTGAGTGGAGCAGCAGATCTCTCTGTGATGAAGATCTTCTTCCATAGTGCATATCATCCAGAAGGCCTTAGCTATGATATCGCTCTCATTAAACTAACACAGCCACTCACATTCAACGGTCAAGTACAGCCCATCTGTCTGCCTAACTATGATGAAGGGTTCAGTTCAGGATCCATGTGCTGGATATCAGGATGGGGAGCAACAAAAATAGgAGAGGTGAGTGTGTCTCTACACTCTGGACTGGTTCCTCTCCTCTCTATTCGAGAGTGTGGAATCCCAGGACTTTCACCATGGAACATCTGTGCTGGGTATCTGACGGGTGGAGCGGGCACATGCCagGGGGACAGCGGTGGGCCACTGGCCTGTCAAGCCTCGGTGTGGAAGCTGGTGGGAGCAGCGAGCTGGGTTCAGGGCTGCGGAAAACTGAACAGCCCAGGAGTATACACCAGTGTAACTTACGCTCTTCCGTGGATACACCAGACCATGGAGAAAGAAGAGGAACGAACTGTTTGAGTATCATTTCTGCACGGACCACTGAATACAACTCCCATCTACATAGAAGTGTACTAGTAATCTGACATGGATTGAGAACTATTTTACAGAACTGGTGCACAATCTACACTGAGGCACAATCACACTTTAATTGTTTATGAGCATAATAGCTGTTTTGCTCTGTGCTGTCACAGATGGGTAAGCATTAGCACATGTTTAAACTACTGAAATTGTTTGAGAGAATAATAcgttatatttatatgtttatttatgtatccACAGATTTGTTtctaatctatttatttttaaactactaTTTTTGCACACACAGCTAAAGGCAGGATCTTAAACACTCATCAGTGTTTGTATTAGAAATAAATGACACATCTAAATGTCATTCACGACAGTGTACACAGATATTGCATCACAGTTGCTAGAAAAGAGATAAGTGAAAGTCATAAATTATGTCATTATTAGCTAGGTAGTAGCCTACTAGCTAATTAACAGTTTGGAAGAGATAGTAGTTATGAATCAATGTTTGGCTAATTCACACCAAACATGGTTCAGAAGCGATGCGGCACCTATGCTTCCATCATAACAAGTGTTTCAATCCACTCCAGCTATGTTAGAGAGGCGTAAAAATCGAGTCATCACATTGTCCTACTTTCAGCTATCAAGCTTGTCATACTTTAGGTTTGAATTGCGCTAGTCATTATTTTATAGCCTAGTTAATTAgctttccaggcaaccaaaacatgaaaCTGGGCaagcattttaaatttaatcataTTAAAAACATACTAATCCCTGcgtagttagctagctaacctctATGCTAATGATAACTAGCGTTTCGGTAACCAGCGAATATAAGGGTGAATATAGCTATAGTATGAAATTGGCAATATGGAGTCCTTACActggcaaaaatatatatttttgtagtaTTTTCTAAAACAAGATGACATTTCATAAATTTTTTCTCACAGgcataaaaaaagttattttatgttattaattaattgctATGCTTTAATTGGcatagtaatattttaaatagtagAAGAGCTGACAAGCAGATGtaactgaaacttttttttttgcagctataacataCTAAAATAAACAACGAGCAAAGGCTCTTTACTCAATTATTGAGTTTATTATAAAACAGAGAAAGGCAAACATGAGCGCGAGTGTGAAAAGCAGCTCGAGTAGCTTAAAAAGAGTTCAatttttaattgaatatttCACCTGAAAAAtgtttctaataataaatgaaggcTATTGGGGGCACATTAGCATTATGCCCATGTAGTCATACTCATTCGTTGTTAGCCAAGTCCTGTTAGCATCACATTAACATATTCAGGTGAGGTGTTCGGTGTATAAAGCTCGAAGGGAAACATGCAGCATGTGGAAACCCACCATGCAAAACTAAATGAAGTCAGATCAGCACTGATCTTTTCACCACACACGGCGAcggctgaaaaataaaaccacactgTGATAAGAAAGCTTAAGAGAAAGTGGCAAAAAACGAATCAAAATCCAAAATGACACAAGAGCTCATACTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442578 lncRNA downstream 21899 10191996 ~ 10195709 (-) True G373678
TU442554 lncRNA downstream 87551 10129832 ~ 10130057 (-) True G373658
TU442553 lncRNA downstream 87978 10128809 ~ 10129630 (-) True G373657
TU442551 lncRNA downstream 88194 10128932 ~ 10129414 (-) False G373657
TU442550 lncRNA downstream 89719 10127183 ~ 10127889 (-) False G373656
TU442619 lncRNA upstream 18845 10255003 ~ 10268661 (-) True G373714
TU442626 lncRNA upstream 52222 10288380 ~ 10289373 (-) True G373719
TU442628 lncRNA upstream 54479 10290637 ~ 10292578 (-) True LOC113537663
XR_003403786.2 lncRNA upstream 54485 10290643 ~ 10292578 (-) False LOC113537663
TU442650 lncRNA upstream 186005 10422163 ~ 10423467 (-) False cab39l
XM_026931752.2 mRNA downstream 76031 10133212 ~ 10141577 (-) True cryzl1
XM_026931753.2 mRNA downstream 93635 10120542 ~ 10123973 (-) True cbr1
XM_026932341.2 mRNA downstream 100636 10104532 ~ 10116972 (-) True morc3b
XM_026932342.2 mRNA downstream 100675 10104532 ~ 10116933 (-) False morc3b
XM_034300286.1 mRNA downstream 174353 9993701 ~ 10043255 (-) False bcl9
XM_034300202.1 mRNA upstream 119068 10355226 ~ 10359434 (-) False LOC113537273
XM_034300203.1 mRNA upstream 119068 10355226 ~ 10359434 (-) False LOC113537273
XM_026931685.2 mRNA upstream 119068 10355226 ~ 10358112 (-) True LOC113537273
XM_026931660.2 mRNA upstream 161743 10397901 ~ 10399251 (-) True arl11
XM_026931674.2 mRNA upstream 185994 10422152 ~ 10435367 (-) True cab39l
TU442201 other downstream 298868 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 1610768 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 1785184 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 1888582 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 2301287 7912466 ~ 7916321 (-) False fam155a
TU442843 other upstream 635126 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 1236722 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 3072880 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 3087924 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 3089359 13325517 ~ 13325608 (-) True trnar-ucu_16

Expression Profile