RNA id: XM_034299861.1


Basic Information

Item Value
RNA id XM_034299861.1
length 3769
RNA type mRNA
GC content 0.48
exon number 9
gene id sh3pxd2aa
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9807172 ~ 9823708 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCACCAGCCTACAGATACACCAGTCTTAGCGAAGGATCACAGGGATACAAAGgctggtGGTTCGTCAGTACTGCAGAAGAACAAGGCTGGGTTCCTGCCACATATTTGGACGCTCAGACTGGCACTAGAGATGATCTGGACCTGGGTACATCTAGATCAGGAGaggTTACTAAGCGGCGCAAGGCCCATCTGAAGCGACTGGACCGGAGGTGGACACTAGGGGGCATAGTCAACCGCCAACAGAGTCGAgagGAGAAGTACATCACTGTGCAGCCCTACACCAGTCAGGGTAAGGACGAGATCGGGTTTGAGAAAGGAGTAACCGTGGAGGTCATTCAGAAGAACCTGGAGGGATGGTGGTATATCAGGTACTTGGGCAAGGAGGGCTGGGCCCCGGCTTCATACCTGAAGAAGCTGAAAGACGACCTGTCCCCAAGGAAGAAAACCCTGACTGGCCCCGTGGAGATCATTGGTAACATCATGGAGATCAGCAATCTGCTCAACAAGAAAGCGGTCAGCGAGAAGGATGTGCAGACGGATGGAGAGGCTACCACACCTGATCGTCACATCTCCAAGAGCGAGATCAGTCTTCCCATGCCATGTGCCCCTGAAGTAGACCAAGTTTCAGTGACAGCCAGCACTGCCCCAAAGGCAGGCTTGCAGTCTGCATGTAGTGCCACCCTACAAGACACTAAGCCAAAGGCAGAGCCGGGCTCGCCTGCTATAGCAAGAGTGGCGCCACACCGAGTGGAGATCGGTTTTGAAGCTATAGGATCTCCAAATCTCAGACAGAAACCTCCCCCTCGACGAGATACAAATCTGGGATTCCAGCTGCCAAAGCCTCCAGAGCCCCCTACTGTGGAAACAGAGTACTACACCATTGCAGAGTTTCAGTCCTGCATCTCAGATGGCATCAGCTTCCGTGGAGGACAAAAGGCTGATGTAATAGAGAAGAACTCTGGTGGCTGGTGGTACGTCCAGATCGGGGACATGGAGGGTTGGGCACCTTGTTCCTACATTGACAAGCGCAAGAAGCCTAACCTAAGCAGGAGAACTAGCACACTCACTCGCCCCAAAGTGCCACCCCCGGCACCACCTGTCAAAAAGCAGGACTCGGAGGACACATCTTGCCCCAGTGCTTCCGCCTCCAAAGCTCCAGAATCCCCCAGTAGGCCTGTATATGAGGAGCCGGAGTATGACATTCCTGCTATCGGATGTGATCTGGATGTGGACACAAGCATTATAAAAAAAGAGCCTCGTCCTGTGcttataaaaagcagtaaagcTGCTGCTGAAAGAATCGCTCAGGCTACAGGTAAAGCCTCACCTCTTTTTACTGTGAAGACCTCCCCCTTAAGGAATGAGCACTCAGTGGAAGAAGTCACCAGGGAGGAGGCAATTTATGAGAATGATGGTTTTAGATATTCCTCTGAAGACTTTGTCTCTGCCAGAGAATCTAGTGCTGTGGGTTCAGAATCCCCAAGAAGTCGTACTTTGGGCCGCAAACCCCTGGGGTCCTCATCTGGGGGCGGAAAATCTTTCAGGGACCCTCCAGATCTGCGAACTCAGTCACTAACCCGTGGTGAGAAGACCAGCCCAAGATTGTCTTCAGATGAATCTGGCCGAAATCCCAAAAGGGAGCCGGTTTTGCGCAAGGATGTGGAACTCCGGATTGGTCAAAGCCCCTCAACTCGTCCCAAACCAGTGGTCCGACCAAAGCCCCTATTGACCAAGTCTGAAACACAGAGCCCAGAGAGGATGGACATCAGCAGCTTGCGGCGGCAGTTGCGTCCTGCAGGAATTCGACATGGGATAGTCCGTGCACGTGGTGGAGAAGACTCTGAGACAGCATCAGTGGTGTCATCAGAGGATTCTGTGACCTCCCGAAGCACATCAGACCTCTCCAGCACCTATTCTAAGGGCAGCAGAGGGGACTCTGATTATGAGGTTGCCTTGTACCGTACTACAGATGCATATGAGCGGGCACAAGAATCTGAGCTCAGCTTTCCTGCTGGTGTGGAAGTGGAGGTACTGGAAAAGCAGGAGAGTGGCTGGTGGTATGTCCGCTGGGGTGTAGATGAGGGCTGGGTACCTACGTTCTACCTAGAGCCTATTAGGCAACCTTCAGATGCAGGTGTCTCAGAGTCTCATGATGGATCCCTGGCAGAGCTGAGCAACACCAGCAAGTCGAATAGCTTAGAAAAGAATGAGCAACGTGTCCAAGCTCTCAATAACCTAAATCAGCAGAATCTACGACGGGCAACAAATCCCAGCCCTCCTATTCCCAATAAGCCACCTGGTGGCTTTAGTAAGCCATCCCCCCAGCTCAACGGTTCAGGTGTACGAATGCGGAACGGCGTTCGTCAGGCAGCTGTGCGACCACAGTCAGTTTTTGTGTCCCCACCACAGCCTGTGAAGGACACCAATTTATACACAGGGTCCTTAAGGCGCAATGAATCACTAGGTGCCAGCGATCACATGAGGTCTAGTGGTGGTGTGCGCCGAAACTCCTCCTTCACTGCTGTGCGGCCACAGCCTGCTACTGATGTAAGGATGAGATCCGGAACCACCACAGTTGCACCAGCCGGAAGCTCTAGCCCCTTGATTGCCCAGAGAAATGGAATTCCAGTCTCTACAGTGAAGCCCAAACCCATAGAGAAGACGCATCTCATTCATAACAACCTACGGGAAGTCTATGTCTCCATTGCAGATTATCGTGGAGACGAGGAGACTATGGGCTTCCCTGAAGGCACCAGTCTGGAGGTTCTAGAAAAGAACCCTAATGGATGGTGGTACTGCCAGGTTCTAGATGGCCTACAAGGAAGGAAAGGCTGGGTGCCATCCAACTaccttgaaagaaagaaatagcaCCGACTCACCTCCCCAAAGAATGTtacttaaatttaaatgtacatttgctATCAAACTCTATGAGGGGGACTTTTTTGTATCAATATGAGACACTTTAGTGCTGGTTTACTTAAAATTACATAAGACTCTAAAGATGATCAGTTATGTGTAAGTGGAGTACGCAAGTAAGAAAATGCCATCAAGGAAAACTGGGCTATCCCAGTGTCTTAAGCATCATTGGAGGATAATGTCTCCATtttgaaagaagaagaacagaaatGGTTTTGATAGAATGGTAGATCCAGGCAAATGTTGAGAGAAATTTTATGCCAAATGGGTGCCTTTGTCCATCATTGACTGAATGTTAAATGGAATAATTTAAAACCAGTGAATCAGTCTAAGTACCAAACTTCAACTTGGTGCCATAGGCCTATGAGTGCAGAAATCAACCAAAACTATTTTTGCtacaaaattacagaaaaaaatagaaatggagAGATTTCagtaaaagaaacacacaaaatgagTGAGCACTCAAAAACAAGAATGTAAGACATCGGATAAGCAAATAACAAATGGTCTTTACCGTTGAGTGCATTTAAAGATTACATttgattttcatatttttaaacttttgttcagttttttaattgctttatcGTATCTTGTGCATTTTCATGTCTTCCTTAGAGATGTATTTCTGCTTTCTTGTGACATCCCTGCAACTCTATCGGCCTGGAAAAAGAAGTCCCTCAACGAGATACTTGTCATGTGATCTTTCGTTTGTTCTGATGTGTCTCTGGTGGGGGTTTTGTAATTGGCTTTACGTTTTTGGCTCTCCATTTTCCTTTACCCCTTTCCTTACCTATAAAGCCCAGCCGTCATGAATAAAGGTCACTGATTCATTAAAGAATAA

Function

GO: NA

KEGG:

id description
K24032 SH3PXD2; SH3 and PX domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442133 lncRNA downstream 7262 9793369 ~ 9799910 (-) True G373303
TU442132 lncRNA downstream 7262 9793426 ~ 9799910 (-) False G373303
TU442149 lncRNA downstream 14551 9792282 ~ 9792621 (-) True G373316
TU442140 lncRNA downstream 20311 9785983 ~ 9786861 (-) True G373310
TU442143 lncRNA downstream 20311 9786262 ~ 9786861 (-) False G373310
TU442150 lncRNA upstream 1753 9825461 ~ 9825693 (-) True G373317
TU442160 lncRNA upstream 7899 9831607 ~ 9832325 (-) True G373327
TU442236 lncRNA upstream 138714 9962422 ~ 9964543 (-) True G373398
TU442515 lncRNA upstream 198829 10022537 ~ 10024885 (-) True G373629
TU442537 lncRNA upstream 260731 10084439 ~ 10084737 (-) True G373649
XM_026932141.2 mRNA downstream 101346 9597014 ~ 9705826 (-) True cfap58
XM_026932385.2 mRNA downstream 259915 9306733 ~ 9547257 (-) True sorcs3
XM_026932386.2 mRNA downstream 418436 9306733 ~ 9388736 (-) False sorcs3
XM_034299956.1 mRNA downstream 959008 8835487 ~ 8848164 (-) True caly
XM_026932095.2 mRNA downstream 1008924 8796367 ~ 8798248 (-) True msx1b
XM_034299863.1 mRNA upstream 55205 9878913 ~ 9918779 (-) False LOC117596103
XM_026931714.2 mRNA upstream 96114 9919822 ~ 9927977 (-) True stn1
XM_034299958.1 mRNA upstream 96114 9919822 ~ 9927674 (-) False stn1
XM_026931715.2 mRNA upstream 96114 9919822 ~ 9927577 (-) False stn1
XM_026931646.2 mRNA upstream 107741 9931449 ~ 9937173 (-) True lrrc58a
XR_004577317.1 other downstream 1200332 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 1374748 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 1478146 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 1890851 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 2082377 7718263 ~ 7724795 (-) True G372086
TU442201 other upstream 55135 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 1047576 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 1649172 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 3485330 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 3500374 13324082 ~ 13324173 (-) True trnar-ucu_15

Expression Profile