RNA id: XM_034299864.1


Basic Information

Item Value
RNA id XM_034299864.1
length 1960
RNA type mRNA
GC content 0.57
exon number 13
gene id cct4
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14890222 ~ 14898142 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTGGTCGCAGCCGGTGGCTCTCTGGAAGGTTCTGTTGTAATTTAACGGAGACAGAACCGGAGCGAATCCGCGTCCATCCGAGCCGTTGGAGCGGTGTGCGGGTCAGCAAGGAGAGCCGACGTTTTCCTAAAACCTTGACAAGAATTAATTTGGTGGGATTtcgtaataataatactaaaataaagaTGCCCGAAGCCGCGATAGCAGTGCCGAAGGGTCCAAGCGGAGGCAAGAACAACGGAGGCGCTTATGTGGACCGGGACAAACCGGCCCAGATTCGGTTCAGCAACATCAGCGCTGGAAAAGCCGTCGCCGATGCCATCAGGACGAGTCTCGGCCCTAAAGGCATGGACAAAATGATCCAGGACGGGAAAGGAGACGTCACTATCACTAATGACGGAGCCACCATCCTGAATCAGATGCAGGTCCTGCATCCTGCTGCTAAAATGctggTAGAGCTGTCCAAGGCTCAGGACATCGAGGCTGGAGATGGCACTACATCTGTGGTGGTGATCGCTGGAGCTCTTTTGGACGCCTGTGCTAAGCTGCTGCagaaagGCATCCACCCGACCACCATCTCGGAGTCGTTCCAGAAGGCGGTGGATAAGGGCGTGGAGATCCTGACCTCCATCAGCCAGCCGGTGGAGCTGAGCGACCGTGAGACTCTGCTCAACAGCGCCACCACCTCGCTCTGCTCCAAAGTGGTGTCCCAGTACTCCAGCCTGCTCGCCCCGATGAGCGTGGACGCCGTCATGAGGGTCATCGACCCGGCAACCGCCACCAGCGTCGACCTCCGCGACATCAACATTGTCAAGAAGCTCGGTGGAACCATAGATGACTGTGAGCTGGTGGACGGTCTGGTTCTGACCCAGAAGGTGGTGAACAGCGGACTGTCCCGCGTAGAGAAGGCCAAGATCGGCCTGATCCAGTTCTGCCTGTCCCCTCCGAAGACTGATATGGATAACCAGATCGTGGTGTCGGATTACGCGCAGATGGACCGCGTGCTCCGCGAGGAGAGAGCTTACATCCTCAACCTGGTCAAACAGATTAAGAAAGCCGGCTGTAACGTCCTGCTCATCCAGAAATCCATCCTCAGAGATGCGCTGAGCGATCTTGCTCTTCATTTCCTGAACAAGATGAAGATCATGGTGGTGAAGGACATCGAGAGGGACGAGATTGAATTCATCTGCAAGACGATCGGCACCAAACCCATCGCCCACGTTGACCAGTTCACGGCGGAGATGCTGGGCTCGGCTGAGCTGGCAGAGGAGGTGAGCCTGGACGGCTCAGGAAAACTGGTCAAGatCACCGGTTGTGCCAATCCAGGTAAGACGGTGAGCATCGTGGTGCGCGGCTCCAACAAGCTGGTGATCGAGGAGGCTGAACGCTCCATCCACGATGCTCTCTGTGTCATCCGCTGCCTCGTCAAAAAAAGGGCTCTGATCGCAGGCGGCGGCTCTCCGGAGATCGAGCTGGCTCTGCGCTTGGCTGAGTACGCCCGCTCTCTGGGCGGCATGGAGGCGTACTGCGTGCGCGCCTACGCCGACGCCCTGGAGGTCATTCCCTCCACGCTGGCCGAGAACGCCGGTCTCAACCCCATCTCCACGGTAACCGAGCTGCGCAACAGACACGCTCAGGGTGAGACGACGGCCGGCATCAACGTGCGCAAGgGTGGTATCTCTAACATCTTGGAGGAACTGGTGGTCCAGCCCCTGCTGGTGTCCATCAGCGCCCTCACCCTCGCCACGGAAACAGTGCGCAGCATCCTGAAGATCGACGATGTCGTGAACACGcgataaggtgtgtgtgtgtgtgtgtgaagagagcaCTGATAGACTGAAGCACTGCTGCTGAAGGATGTGGGGACCTCGCCAAACACCTCGCCATGACCAACCGCTCATGAGCTGTCTGTAGATGTTACGTTGCGTaatttaataaacttttttttttggacacca

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0001666 response to hypoxia biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09496 CCT4; T-complex protein 1 subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445468 lncRNA downstream 148673 14740261 ~ 14741549 (-) False b3gnt2a
TU445465 lncRNA downstream 150415 14739369 ~ 14739807 (-) True G376171
TU445467 lncRNA downstream 150415 14739480 ~ 14739807 (-) False G376171
TU445429 lncRNA downstream 205894 14682387 ~ 14684328 (-) True G376143
TU445412 lncRNA downstream 228911 14657946 ~ 14661311 (-) True G376127
TU445642 lncRNA upstream 12625 14910767 ~ 14961052 (-) False akt3b
TU445691 lncRNA upstream 137023 15035165 ~ 15035466 (-) True G376364
TU445961 lncRNA upstream 146570 15044712 ~ 15045359 (-) True G376574
TU445990 lncRNA upstream 200874 15099016 ~ 15101012 (-) True G376602
TU445995 lncRNA upstream 219370 15117512 ~ 15117893 (-) False triobpa
XM_026932333.2 mRNA downstream 1313 14880246 ~ 14888909 (-) True fam161a
XM_034300308.1 mRNA downstream 11638 14855572 ~ 14878584 (-) False xpo1a
XM_034300307.1 mRNA downstream 15557 14854881 ~ 14874665 (-) True xpo1a
XM_034299884.1 mRNA downstream 38269 14787119 ~ 14851953 (-) True usp34
XM_026932393.2 mRNA downstream 130184 14751030 ~ 14760038 (-) True commd1
XM_034299873.1 mRNA upstream 12520 14910662 ~ 14934503 (-) False akt3b
XM_034299872.1 mRNA upstream 12520 14910662 ~ 14934503 (-) False akt3b
XM_034299870.1 mRNA upstream 12520 14910662 ~ 14934503 (-) False akt3b
XM_034299871.1 mRNA upstream 12520 14910662 ~ 14934503 (-) False akt3b
XM_034299875.1 mRNA upstream 12520 14910662 ~ 14933948 (-) False akt3b
TU445400 other downstream 177845 14697239 ~ 14712377 (-) False ifngr1
TU445430 other downstream 205894 14683102 ~ 14684328 (-) False G376143
XR_004577346.1 other downstream 615092 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 851236 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 851624 14038528 ~ 14038598 (-) True LOC113537774
TU446065 other upstream 557637 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 557637 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 557637 15455779 ~ 15457083 (-) False dpy30
TU446479 other upstream 1019486 15917628 ~ 15920553 (-) True G376956
TU446429 other upstream 1035495 15933637 ~ 15942686 (-) False khsrp

Expression Profile