RNA id: XM_034299877.1


Basic Information

Item Value
RNA id XM_034299877.1
length 2965
RNA type mRNA
GC content 0.50
exon number 14
gene id igf2bp2b
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11891674 ~ 11937127 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgAGCCACACTGTGCCGCTGTGTTCAGTGGATCCGGTCCAAGCGGCTCAGCTCCGTCTGACTGTGCCGTTTACTCTGACAGCGGGTTGCCAGATGGCACGTGGTGTGTGGTGCGCACCCAGAGCCCGTCGCTTGCTCTCTTTGCTGTCCCACCTACACCACGCCGGTGCCTTCTTAAAAACCCACCCGTGCCCGTTTCCCCCGGTTCCAGAGCCGAACCAACACACGACCACGTGGAACAATGTTTTAGACAGCCTGTTATCACAGTACGGCTCAGTAGAAAACGTGGAGCAAGtGAATGCTGACTCAGACACAGCTGTGGTGAATGTCACATATGCATCAAAAGAGGAAGCTAAAGAGGCCATAGAGAAGTTGACGGGCCACAGTCTGGATAATCACTCCTTCAGCGTGTCCTACATTCTGGACGTGGAGGGCAGTGGGAATGAGAGTGAGGCGGGACCCCAGGCCCAGCGTGGGGCGTCCCGGGGAGGCAGAGGGGCGCGGGAGTCTGACTCCGCCCAGTCCGGGGCCATGGGGGGTCTGCAGGGAgctcaccacacacaccatgagCTCCCGCTGAGACTGCTCGTACCCACACAGTTTGTGGGAGCCATCATTGGAAAAGAGGGCCTGACCATCAAGAACATCACCAAGCAGAGCCAGTCCAAagTGGACATCCACCGTAAGGAGAATGCAGGGGCTGCGGAGAAGCCCATCACCATCCACTCGTCTCCAGAGGGCTGCTCACATGCCTGCAGGATGATCCTGGAGGTCATGGAGAAAGAAGCCACCGACACCAAGACTGCTGAGGAGGTTCCTCTGAAGATTTTGGCCCATAACAGTCTTGTAGGACGGCTAATTGGTAAAGAAGGCAGGAACCTGAAGAAGATTGAACAGGACACTGGGACCAAGATCACCATTTCCCCCCTGCAGGATTTGACCATCTACAACCCGGAGCGTACCATCACAGTGAGGGGAGGGGTGGAGGAGTGCTGTAATGCAGAGGTGGAAATCATGAAAAAGCTGAGAGAGGCATACGAGAACGACGTGGCCGCCCTGAACCTGCAGACGGCACTGATCCCTGGGTTGAACCTGAACGCTTTGGGGATTTTCTCTCCTGCTCTGCCTGTTCTGTCTTCAGCCACAGGGCCACGTGGAGTCACTTCACTTCCTGCCACCTACAACCCCTTACTGGGTCAGGCATCAGCACTGGCTGGTTTGTACGGATCTCCCCCCACTTTACCCCTTCAACAAACAgCACCGGAGCAGGAAGTGGTGTATCTTTTCATACCCACTCAAGCAGTTGGAGCTCTAATAGGGAAGAAAGGACAGCACATCAAGGAGCTGGCACGGTTTGCCGGAGCTTCTATCAAAATCGCTCCATCAGACAGTCCTGATGCCCCGGAGAGGATGGTTATCATCACCGGCCCTCCTGAAGCTCAGTTTAAGGCTCAGGGTCGGATATTCAGAAAGCTGAAGGAGGAGAACTTTTTCACTGCTAAGGAGGAAGTGAAGCTGGAGACGCACATCAAAGTCCCTGCGGCCGCTGCTGGTCGAGTCATAGGCAAGGGCGGGAAGacgGTGAACGAACTTCAGAATCTCACCAGCGCTGAGGTCATCGTTCCACGGGACCAAACGCCCGATGAGAACGACGAGGTGTTTGTGAAAATCATCGGCCATTTTTTTGCCAGTCAGACTGCACAGCGGAAGATCAGGGAAATCATCCAACAAgtcaaacagcagcagcagaaaaaccagcagggggcagcaaCACCATCGCAGCACACCAAGtgaccagcagggggcagccagcaagcagcagcagcagcagcctatGAATGTAGCTCCTCCGAGCGCAAACCAAATCGAGCAAAAAAGGCGCAAGAGAACGAAAAAACAAGCGGGAGGGAAACACACGAGACGGACAAGCAACAAGATCGAAACCAAAGAACCTTATAAGACCTGAGCGAGCCTCACTCCGAGAGCAAAAACAACCCTGTGAGTGCTCTGAACATCCAGACGAGCGCGCCAGCAGGTGACGGATGTCTAAAATTCTGAACGTGTGGAGATGCTGTGTAACGGTACGCTGGGTTGGATCTGTCCTCTGAGAAGCACACGTTATTAGCGAAGCGGAAATCCGGCTGCCTGTGAGATGATCTTACCAGCAAACATCGTGCTTCTCTCCACACAGGAGTGGAAGTGGCAGCCATAAGCACATTCAGGCTGAGTGCGAGCACACTGTGGAAATGTAGCCTGACTAGCATTTAACAACGTGGACTGTTGAGCGAGTGACACATAACTACCTGAGGGAGTGTTGAGTAAAGACGAGTAGGTGTGTAACAGTGTTCATTGATTAGAAGACCATAACGTGCTTTCTATTGAGTCATTTGTAGCCTTAGATAGTTttacttaagaaaaaaaaaaaaaaaaaagcaaggacACCTAGGGCAGATTTTCCAACTCATTTAGCGTGTGGCAAAGCGGTTAGCATGTCCCAATCACACTCTGAAATTTCCTTAGCATAGATGCTAATTATGCACTTTTTAGTGTTTGTTAATCAGGCCGTTAATGTGAATAAATAACCAGGCTTTAGTTTAGCTGTTCTAAAGCTTCTTAGTTTAAAGATTCTTAGTTTCCGTTTAATAGCATCTGATAATTAGCCTTCGTGTTAACCCGCTTCTCCCGTCTTGCTttatctctgtgtttctttcccAAATTTTTTCAAGCTCATCTGTCCAAGATGAAAGTCTACTGACCTCTCCTGGCCTACAAATTAtgagggataaaaaaaacaaaacaaaagagtttAATGTGATTCTAATTGTAAAAATCTCCAATCAGTCTGATATTATTGcgattttattgttgttttgggAAAGCCAGAATGGCCTCACTCATTCTAAATACATGTTCTGTACTAGATTCAACAAAAgcacttaaaatattttagcgtaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443528 lncRNA downstream 136559 11752574 ~ 11755115 (-) True G374495
TU443474 lncRNA downstream 222418 11668993 ~ 11669256 (-) True G374442
TU443394 lncRNA downstream 295435 11595192 ~ 11596239 (-) True G374371
TU443391 lncRNA downstream 296693 11593966 ~ 11594981 (-) True G374370
TU443231 lncRNA downstream 531253 11358843 ~ 11360421 (-) True G374230
TU443741 lncRNA upstream 26677 11963804 ~ 11964781 (-) True G374680
TU443757 lncRNA upstream 141764 12078891 ~ 12084032 (-) True mzt1
TU443791 lncRNA upstream 155385 12092512 ~ 12092736 (-) True G374727
TU443961 lncRNA upstream 221581 12158708 ~ 12158915 (-) True G374885
TU444014 lncRNA upstream 385837 12322964 ~ 12323575 (-) True G374935
XM_034300193.1 mRNA downstream 25350 11769846 ~ 11866324 (-) False vps8
XM_034300192.1 mRNA downstream 25350 11769846 ~ 11866324 (-) False vps8
XM_034300191.1 mRNA downstream 25350 11769846 ~ 11866324 (-) False vps8
XM_034300190.1 mRNA downstream 25350 11769846 ~ 11866324 (-) True vps8
XM_026931929.2 mRNA downstream 201154 11666909 ~ 11690520 (-) True march4l
XM_034300296.1 mRNA upstream 4025 11941152 ~ 11943095 (-) True LOC117596169
XM_026931942.2 mRNA upstream 8707 11945834 ~ 11953213 (-) True LOC113537469
XM_026931995.2 mRNA upstream 19609 11956736 ~ 11984895 (-) False ubac2
XM_026931994.2 mRNA upstream 19609 11956736 ~ 11984895 (-) True ubac2
XM_026931987.2 mRNA upstream 59884 11997011 ~ 12061385 (-) False dachc
trnar-ucu_14 other downstream 418703 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 1019128 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 1972934 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 3284834 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 3459250 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 1371911 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 1386955 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 1388390 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 1388866 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 1390925 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile