RNA id: XM_034299882.1


Basic Information

Item Value
RNA id XM_034299882.1
length 2529
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC113537289
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14068175 ~ 14073205 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGCACTTTCACCCTTTCTGTCTAAAACACTTCTATTGTGTGCTGATGTGAGTTAATGCTGTGTACGCCAGCACCACCAGGCACACCTGACTTTGTATGTGGTAAAAAGCGGTTCTTCATGGCGTGCTGCGTCTTCCAAATCATCTGTATTCTTATCATCCACCTGTGGCTCTCACCCCTAATCAGCAGTAACACAAACGAAAGTGATCCGGACTGTATCCCTTCTATCATGGTGCCACGGAACACAGTGTGGAAAGCTCCTGTAATGAAGTCCCTGAAGATCAACTGTACTGTACACAGTGAATCACGCTGTTGGAAGAACATAAATGTCACATGGTGTAGAATTGATGATAAGAATGAATGCAGAGCTTTGAACCGCTCCAATTACACCACAAACGAATGGGAAAGTGTTGATCTTAGTAAAAGATTGTTGTTCCTGATTTTCCATAACATATCCATGAAGGATGCAGGTCTTTACAGATGTAGAATAAATTCACCGACACCCACTGTCAGCCATTCTATCAATGTCACTGTGACAGATTATGTTCCAGATTGTAACACTGACTCCAAAGTTGTAACCGTAGAAAACAATACAACAAACAGTTCAAATCCGATTGTTGCAAAAAAGGAACCGCTACAGCCCTACGTGTACATCTACAGTGGGATTGGTGTGCTGCTGCTCGTAGTGGTTGTTGTGTCTGTAATTGTCATCTGGTGTCGAGATTTACAGTCCACAGCAACTCCAGTGGCTGATCTTGCTCCACCCATATATAATCCCAGGGAGTCTCCACGTAGCAAAACCCAAACTCTTCCTGCCCAACTCAGTCCACCAACACCCTCTATCTATGACATCCCTCCTGTAAGAGTGACATCTCTAAGAGACCGATCATCAGCAGGAGGACATCCTGTAAATCGGGGATCACCGATTCGATGCCACAACCGTGACACTGTGGAAACGGAGGAAGACGAGAATCCTTTGATATATGCCACCCTAAATCATGGGGCTGTGCCACAGAGACCTGTTAGAGTTGCTCATGTACAGATTGAGGCATCAGAATATGCTGCCATTAAAGTCACTTAACTCTAAGTCCTAATGCTACAGAGAACTGACCAGAGGCcagttttgtgtttatttccctAACTGTTAAAGTCTGGGCTCAGAACTTTACTTAAGGATTTTGCTGTAGGCCTATTGGTTGACTGCATAGGCAGCGTAGACCTATTTGTTGACTAAATTCTGTTTGTTCACAATATTCATACATCAGCTATATTGCTTGTGACAGCGTGCTCAGTGTGGAATGAGGGCTAGTTGTCACTGAAACCAATGTTCATACCAGCCGTAACTATGATCCATACCAAATAAGACCATGAGCCATACCAAGTGAGAATGTGATCAATACTAACCAGGACCGAACCAAGACTAAGGCCCATATCAACCAAGAACATGAGAATACCAACCTACGCAACACCAAGGCCTATACCAGCAGAGCACATGGAAAGGCCCAAGCCCATTCCAACTGAGATCAAGACAAGCTTGAGATGCATACCAACTGAGATCAAGACAAGACCAAGATCCATACCAACTGAGATCAAGACCAAGACAAGACTAAGGCCCATACCAACCAAGACCAAGAAAAGATCCAGGCCCGTACTGACCAAGACCCATACCGAACAGGAACCAAGGCAGGACCAACACATAATTATCATTTCTCATGTTTAAGACTTATTGTCAAGACCAAGACAATATGCAACAAAATGTGATAAGACCAAGGTCAGGACACAGTGATCTCAAGAAAGCTCTTGGTCTTGAAACCAGTGTTGTAACTGGACAACTCTGGGTGTGATTGAGCACATAGAAAAGGGAACCAAAAACATGGATTTCCAAATATACTGAAATTATGTCTTGCTGTTTCAAAAATACATCTAAATACTATGTGAAATGGATGATCATGGTGAGGTTTATGTCCCACAGACTTGGCTTCAAGgggacaaaaatacacaaaatagtTGGTAATAAAGGAAAAAGCTCCCATTCCAAGCCTACTTCAGCTTCCAGTTTTCCAAAATGTTCACTGTTTGAAgcttaatgaatatttattaatgaccTAAACATGGTTTGATACATGACTATATAGTTATAGGCTTATCTATATAATAGACCACTTGTAGTAAAGACAGTGTCTTAAAAAGCAAAGCTGTAGTATGTAGGTATAGAGCATTgtctttatgaatatttattttatttttttttccttaatataGCCAACTCCATGGCTTACAATATTCTTGCACTTTTGGATGGTTctgagaaaatgtgttttgtgatttttgggTGCTTTGTTCATGAGAAATGGGACTGTTCAATATAAAGCTAAGTTTACCGCAGTGCTTCATGTTCTATCTCCCTGCGGTCTTTTTAGTGCACTAGGTATTGTCTTCAGATTTGTATACTTCtttgtggtgatgttttttttttttttgtcctgaaaGTTATGTGTGGAATAATGATAAAGTTTTTGGTCCACTTT

Function

GO: NA

KEGG:

id description
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445042 lncRNA downstream 94081 13972336 ~ 13974094 (-) False klf5a
XR_004577299.1 lncRNA downstream 207401 13853076 ~ 13860774 (-) True LOC117596131
TU444800 lncRNA downstream 231642 13836098 ~ 13836533 (-) True G375615
TU444799 lncRNA downstream 233195 13832468 ~ 13834980 (-) True G375614
XR_004577284.1 lncRNA downstream 237604 13829181 ~ 13830571 (-) True LOC117596119
TU445091 lncRNA upstream 5759 14078964 ~ 14085441 (-) True G375864
TU445072 lncRNA upstream 33017 14106222 ~ 14180614 (-) True rnf11a
TU445099 lncRNA upstream 48293 14121498 ~ 14125258 (-) True G375871
TU445153 lncRNA upstream 201122 14274327 ~ 14275118 (-) False dand5
TU445312 lncRNA upstream 248979 14322184 ~ 14340390 (-) True G376038
XM_026932115.2 mRNA downstream 25507 14036430 ~ 14042668 (-) True tpt1
XM_026932387.2 mRNA downstream 52024 13982745 ~ 14016151 (-) False pibf1
XM_034300346.1 mRNA downstream 52090 13982745 ~ 14016085 (-) True pibf1
XM_026932388.2 mRNA downstream 52091 13982745 ~ 14016084 (-) False pibf1
XM_026931668.2 mRNA downstream 87924 13972851 ~ 13980251 (-) False klf5a
XM_026932340.2 mRNA upstream 14780 14087985 ~ 14094855 (-) True best2
XM_026932233.2 mRNA upstream 23587 14096792 ~ 14105726 (-) True get3
XM_026932239.2 mRNA upstream 33001 14106206 ~ 14115530 (-) False rnf11a
XM_026932202.2 mRNA upstream 63013 14136218 ~ 14247258 (-) False LOC113537614
XM_026932196.2 mRNA upstream 63013 14136218 ~ 14247258 (-) False LOC113537614
XR_003403798.1 other downstream 29189 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 29577 14038528 ~ 14038598 (-) True LOC113537774
XR_003403797.2 other downstream 30313 14037731 ~ 14037862 (-) True LOC113537775
TU445045 other downstream 37296 14027294 ~ 14030879 (-) True G375826
XR_004577357.1 other downstream 52090 13982745 ~ 14016085 (-) False pibf1
XR_004577346.1 other upstream 201612 14274817 ~ 14275130 (-) False dand5
TU445430 other upstream 609897 14683102 ~ 14684328 (-) False G376143
TU445400 other upstream 624034 14697239 ~ 14712377 (-) False ifngr1
TU446065 other upstream 1382574 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 1382574 15455779 ~ 15458205 (-) False dpy30

Expression Profile