RNA id: XM_034299901.1


Basic Information

Item Value
RNA id XM_034299901.1
length 2869
RNA type mRNA
GC content 0.42
exon number 16
gene id LOC113537677
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16975606 ~ 16990016 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGACACAAAGATGGGAGAGAAGCCACACCCAGCTACAACTGCTTTCTTGTTGGTCCTtgtgttgatgatgtcatcaccacTGTTCAGTTGGACAGACCTGACCTTGTCCACAATCTCAGTCTCTCCATACGTCAGCACAGAACAAGAAGGAGAAAGATGAGATCTTTTTGGCCATGGCTTACCATGATTCTACTGACTGTACTCACAAACATCAGCACTGCTCAACACCCTTCATGTATAAATTATCGAAACATATCTGAGCCATGGCGGAATGTTGGCTTTTGCTCCATCTCTTGTAATAAAAGTGACAGTAACCTGAAGGAAGGATGGTACCGCTTCATTGGTGTAGGTGGAGACCAGGTAGTCTCTTCCTGCGCAAGTGCACTGAATAACAAATATGGAAACATAACGAGTTACAGTTACAACTTATTCACATGTAATTCAAGCATCAACTACACGGATTATATGACCTGCAACGAAGGATTCACTGTCTACTTCCTCCGGCCCACCAAAGAAACTTACGCTACACGTCATTCATCCTGCAGCAATTCTTCTTCCTGTGGAGAGCATGCTCAGTGTGGTACTGTTTATGGCAGCTGTTTGTGTGACCCTGGCTTAGTCGTGCTTGAAACCTCATCAAGAAATGACACGTACGGATGCAAAGttctcAGAGTGTCTGATGGCTGCCAGACAGAAAAGTGTGCACAGGACTTTCTGAAAGATCTTGAGAAACTTCTAAACAATACAGATGAACCACTACCACAGAAGACTGTGGAATTTTATTTGGGCTCAGTAATGAATATAACATCTACCATAAAGAATTTTACTGACGACAAAGCGATAATCTCCTATGGAAATAATGTACTATCTGTCACTGAGAAACTGGTGTCTTCACTAGTGACACCAACAGAGACCCAGAATATGACGAGCATTTCACTCAGCAATATTGAGGCTCAAGTATTTATGGTTGGAAATCAGACTACCTTGAGTGAAATCCCCCCGCTCAACGCAAGCGGTTCTTCCCTGAAAATTGATCTCCTTGGGATTTCCAAGAACAACAATGgGTCAGCTGCAGTGGTCTTTATGAGTTACACCAACATGTCCAACATCCTGAAACCTAGCTTCTTCAAGACAACTACCAGTGCAACTAAAACCATGTTGTCCAATGTGGTGTCAGCAACACTTCCTAAAACCACCAACACACAACTCACCAAACCAGTCAACTTCACCTTAAAACACAATGCACCAGACCGTACAGGAAATCTCTCCTGTGTTTACTGGAAGGAAACTGAATGGGTTGAAGATGGTTGTAGCATCACAGAGAAAAACCGCACTCAGACAGTGTGCTCCTGTGTTCACCTTTCTACTTTCGCTCTCATCATGATGACTGACCCAGACAAGGGTGGTAAACCTGATGATGTGATGGAGCTCATTAACACAGTGGCAGTGTCCGTGGGGTTGGTGTTCCTCATCTTGACTATACTGACTCTTGCTGTTTGCCAGAGAGGCCCAAAATTGACCAACGCAGCTTTGATCAACCTGTGTGTAAGCTTGTTTCTTGCTCACTTGGTTTTCCTGCTCACACAACACTACctggaaaacataaaaaaatctaagttgTGTGTAGTGCTGGCTGGTGTCATACACTTCCTCTTTTTATCAGCATTTGTGTGGATGTTCATTGAGGCAGTATTGCTCTACATCTTTGTGAAGAACCTATCAAGGATCAGCTCAATGCAGAGTGAGGTGCTTAACTGGAAATGCATGATTGTCATTGGATACGTCATCCCCCTGGCTATGGTGGGCGTGACTTCTGGACTGTATCCTGACGTCTACGGTGATGAGCGTTGCTGGCTTAAGAACACAGGTGTCTGGATCTTTCTGGGTCCTGTGTCTTGCATTCTTGCTATCAACATGCTCTTTTCTTGTGTAATCATAATAAATCTCAGGTGGGCTTTGTCAAGGCTGGATAAAACCGTCTCGCACCTAAAACACACCCggaCCCTCGTGTTTAAAACCCTGCTCCAGTTTGTCATTCTTGGCTGCCCCTGGACCCTGGGCTTCTTCATTGATCACTCCAAGATGCTAGAGATCGTCTTCCTGTTCTTAAATTCTCAGCAAGGAACCTTCATCTTCATTGTTCATTGTGTCCTCAACCAGGAGGTCAGGAAGCAGTACAAGAAGTGGTGGCTTGCCCTTCACCACAGCTCCAAGTACAAGTCCATGGCAGAAGATCAGACGAGAgcttcacattcacattcaaatTAATAGGAAACAATGTTAATGTTTAGAGAATGTCTTGTTTAAAGAACAGTCAGTGTGGCACATGACCAAGGAATAGTTCAGGAAGACAAATATGACAGCAGAAATATGATGGCTGCAATTTACCAACTATTTGTGTACAAATCTTGGGTAAAGTACATTTGAGACCTGTCAGAGTGACAACAGCTACAGTTATGTTCATTAGCTTTATTAATATACCATTTCTCTACAAAATAAGTAATTACACAGAGAATCTGAAAGCAAAATAATTATGCTAAAAACTCAATGCTATTGTTTTCATATTCTTTGACAAAATAGCTAGTGGTAACTTCAGTCTGTACAACATTTCATACTGGAGCACAAAAACATCCATCTAAATATCTGAAGTGTTAAGTGAACCTGAAAAGCCCCTAATAGGCTTTAATTTCACCAGCTTTTGTAAGTACTTTAAgatgataaatgaaaaaatgaaaatgataacaTGAAAAATGACTTATTTCTCCTAAGTTAATTCCTCCTTGCACTTTTTACAGTACAACTTTCAGCACAACATTCATAAATTTGcattatgtgatttttttaagaatttgcatttgcaaaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447151 lncRNA downstream 116897 16856779 ~ 16858709 (-) True G377422
TU447084 lncRNA downstream 233617 16621167 ~ 16741989 (-) False slc25a10
TU447085 lncRNA downstream 289122 16645096 ~ 16686484 (-) False slc25a10
TU447074 lncRNA downstream 368059 16606330 ~ 16607547 (-) True G377359
XR_004577292.1 lncRNA downstream 375384 16598913 ~ 16600222 (-) True LOC113547464
TU447172 lncRNA upstream 5382 16995398 ~ 16995649 (-) True G377441
TU447211 lncRNA upstream 42887 17032903 ~ 17052265 (-) True G377474
XR_004577336.1 lncRNA upstream 78520 17068536 ~ 17078161 (-) True LOC117596165
TU447707 lncRNA upstream 251819 17241835 ~ 17253715 (-) True G377847
TU447754 lncRNA upstream 326535 17316551 ~ 17316980 (-) True G377874
XM_026932303.1 mRNA downstream 20422 16948813 ~ 16955184 (-) True LOC113537678
XM_026931891.2 mRNA downstream 26807 16943116 ~ 16948799 (-) True LOC113537424
XM_034299899.1 mRNA downstream 55026 16916853 ~ 16920580 (-) True LOC117596111
XM_034299898.1 mRNA downstream 58780 16915413 ~ 16916826 (-) True LOC117596110
XM_034299897.1 mRNA downstream 77604 16888764 ~ 16898002 (-) True LOC117596109
XM_026932097.2 mRNA upstream 119137 17109153 ~ 17118898 (-) True LOC113537557
XM_026932099.2 mRNA upstream 121476 17111492 ~ 17118898 (-) False LOC113537557
XM_026932096.2 mRNA upstream 121476 17111492 ~ 17118898 (-) False LOC113537557
XM_034300261.1 mRNA upstream 141921 17131937 ~ 17145391 (-) False LOC113525649
XM_034300259.1 mRNA upstream 141921 17131937 ~ 17145391 (-) False LOC113525649
TU447143 other downstream 123943 16845012 ~ 16851663 (-) True G377416
TU447144 other downstream 130004 16845012 ~ 16845602 (-) False G377416
XR_004577334.1 other downstream 500175 16425454 ~ 16475431 (-) False LOC113537389
TU446672 other downstream 811236 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 820125 16152919 ~ 16155481 (-) False zgc:158803
TU447682 other upstream 192716 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 276213 17266229 ~ 17268030 (-) True G377862
TU447860 other upstream 717984 17708000 ~ 17712592 (-) False ubl5
TU447895 other upstream 813244 17803260 ~ 17814445 (-) True G377994
XR_004577358.1 other upstream 1173530 18163546 ~ 18166960 (-) False LOC113524896

Expression Profile