RNA id: XM_034299908.1


Basic Information

Item Value
RNA id XM_034299908.1
length 3197
RNA type mRNA
GC content 0.46
exon number 27
gene id LOC113525128
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17657678 ~ 17684129 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTAGAAGGTTATTAGGAAGTTATTAGGAGGTTATTAGAAGGTTATTAGGAAGTTATTAGGAAGTTATTAGAAGGTTATTAGACGGTTATTAGGAGGTTATTAGGACATTGTTAAAATGGAGCTGTGGAGGCAGTGTGCGTCGTGGCTGATTCAGTGCCGAGTTCTTCCTGAGAACCACAGAGTGACCTGGGACAGCGCAcaggtgtgtgagTTAGCCCAGGCGCTCAGAGATGGAGTTCTTCTGTGTCACCTGCTGAACAATCTCAGCCCTCAATCGGTCAACCTGCGGGAGATCAACCTGCGTCCTCAGATGTCTCAGttcctGTGTCTAAAGAACATCAGGACATTTCTAACTGCGTGTCACGAGCGGTTTGGAATGAAGAAGAGTGAACTGTTTGAGGCCTTCGACCTTTTTGATGTCAGAGATTTTGCCAAGGTGATTGGAACGTTGTCCATCCTCTCTCAGACGCCCATAGCTCTTCAGACAGGCTTCAGtgATACGgtggatgaggatgatgatctGTATGACTGTGTGGAGGATGAAGAGAACGAGGGAGACGACATTTATGAAGACCTGATGAGAACAGAGGAAACaccagagacacaacAGAAATTTGAAGTGGACAAGAGAAGCTGCTGTCTTCAGGAGATCAGTCAGACTGAggagaaatacacacagactctgGAGTCTATACAAcagcacTTTATGAGGCCACTGCAGGCTTTCCTTGGGCCAGCTGACATAGAGAACATCTTCATGAATGTAGAGgaattAGCTGATACTCACCGTCGTCTGCTGAGAGAGGTCCAGACATCGATATCCTCTTACGGAGCAGAGAATCTTCATCAGGTCTTCATCGATTACAAAGAGAAGTTGTTGCTGTACGGCCGATACTGCAGTCAGGTCGAGTCAGCGACTAAACAACTGGACAAAATCGCCAGCACGAGAGAAGACGTCCGGATGAAGCTGGAGGAGTGTTCGATGAGGGCGAACAGTGGGCGCTTCTCTCTCAGAGACCTGCTGATGGTGCCCATGCAGAGAGTGTTAAAGTATCACTTGCTGCTGCAGGAACTTGTGAAGCACACGGTGAATCCCACTGATAAGGAGAACTTACGCACTGCACTAGATGCCatgagggatctTGCTCAGTGTGTGAACGAGGTGAAGAGGGATAACGAGATCATTCGTCAGATCACAGCATTTCAGCTCTGTATCGAGAACATGACTCAGTCCCTTGCACTTTTTGGTCGCCCGAAGATCGATGGAGAGCTGAAGATCTGCAGCCCTGACAAGAAATCCAAACAAGACAGGTATGCGTTTCTCTTTGATAAAGCCCTACTGGTGTGTAAGAAGCGCAGTGGGGAGAGCATGGAGCTGAAAGAGCTTATCGACCTGCAGCACTTCCAACTGAGAGACGAACCAACTGgagacaaagaaaacaaaaagtggacaCATACCTTCTTGCTGATGGATTCATATGGCCAGGGTGGTTATGATCTGTACTTCAAGACACGTGAGCTGAAGAAGAAATGGCTAGAACAGTTCGAGATGGCTCTGTCCAACATGTGTCCGGAGAACAGCACGGCGAACGGCCACGACTTCCAAATGTACTGTTTTGAGGACACCACTTCCTGTAAAGCCTGTCAGATGTTGCTCAGAGGGATCTTCTACCAGGGTTACCGCTGCACCCGCTGTAAAATGGCCGCCCATAAGGAGTGTCTTGGACGAGTTCCTGTGTGTGGACGCAATGCAGaaaATTCTGTGACTGTGAAAAAGAGCAAGTCGAGATCTGCCACTCAGAGACAGGCCAAACCAGgtcttcctaaGATGGAGGTGTGTCATGATTACTATGGCGTGCCCCCGCCCCCTGTGGCTTTCGGCCAACCGCTGCATCTCACTGCGGGTGATGTCGTAGAGCTCACGCGCGCCGACGTCGACTTGCAGTGGTGGGAGggCAGGAATCTGACAGTCGGAGAGGTCGGCTGGTTCCCCTGCAGTAAAGTTCAACCCTTCTTACCCAGATCACCTCCTGACCTCACAGGATTCCTCTGgtttGCAGGTAACATGGACCGTTCTGAGGCCAAGAGTCTCCTGATGTCTCGATCTGATGGTACATTCCTTATTAGGCAAAAGGATGGAGGAGAGTTCGCCATCAGCAtcaaGTTTAATATGGACATCCGCCACATTAAGATCACTCTGGCTGAAGGTCTCTACAGAATCAATGACAAGAAAGCCTTTAAAGGGCTCATCGAATTGGTTCAGTATTATCAGGAGAATTCTCTGAAGGAGTGTTTTAAAGACGTGGACACTCGTCTGCTGATTCCATACAAGCATCCAGAGCAGAGTGTGtcctcacactcacacgcatacacacacacgcctaccagaggtatgAGTGAGCGATATTTCGGCACGGCTAAAGTGCGCTACGATTTCTCAGCACGGGATCGGACCGAGCTGTCTCTCAGAGAGGGGGACACGGTGAAGATCATCTCCAAGAAAGCGCACAACGGCTGGTGGAAAGGAGAGGTCTACGGccggGTTGGATTGTTTCCTGCAAACTATGTAGAGGAGGAGCATTCGGACTACTGCTGATTCACGGAGTCATTTGCACACTGAGTGACTCTTTAATCTCTAAAGCCAACTTAGTGATGTACTGAATCATTTAGATACTGAGAAATCTGTAATTGTGACACAAGACTAAAGACGTAAATAATCGAGTCATTGAGTGACTCTTCAAATTTATCTTTTTGAATAAGATTCACTGAATCGTTTAGACACTAAATGATTctttgaaggtgtgtgtgtgtgtgtttgttttttaactacACTTGAAAGCTATTGCTAATTCATTGAttcacagacttttttttttccggaCTCCTACTGATTCTCTGATTCATTTACATATCGAATGACTCTGAATCTCTTGTATTTGACTCCATATGAAGAAGAGTATcaattcactgattcatttacaCCATGACTCTTTGAATCTCTTGTTTCTGACTTCATTTTTAAAGACCCTCTGAACTTCTGGTTTCCATGTCCACTTTAAACCTTGCGACAGTTTTAATGCGATTTTATTGgttgaatgtttatttttttgcttttatttttttaatatccaaCGAAGACTTAATAGTTAATATGAAATTGTATTATAGTAAAGCTTATTTTAGTTTCTGATCTTA

Function

GO: NA

KEGG:

id description
K05730 VAV; guanine nucleotide exchange factor VAV

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447439 lncRNA upstream 57744 17595088 ~ 17599934 (+) True G377652
TU447431 lncRNA upstream 72635 17574761 ~ 17585043 (+) True G377644
TU447429 lncRNA upstream 88211 17569060 ~ 17569467 (+) False LOC113526395
TU447424 lncRNA upstream 88708 17566806 ~ 17568970 (+) False LOC113526395
TU447382 lncRNA upstream 229822 17415404 ~ 17427856 (+) True G377604
XR_004577311.1 lncRNA downstream 17539 17701668 ~ 17702743 (+) True LOC117596150
TU447503 lncRNA downstream 130402 17814531 ~ 17815106 (+) True G377703
TU447520 lncRNA downstream 200909 17885038 ~ 17887303 (+) True G377709
TU447530 lncRNA downstream 254138 17938267 ~ 17942279 (+) True G377715
TU447552 lncRNA downstream 273117 17957246 ~ 17957480 (+) True G377723
XM_034300103.1 mRNA upstream 44804 17588633 ~ 17612874 (+) True dnm2b
XM_034300104.1 mRNA upstream 44804 17588633 ~ 17612874 (+) False dnm2b
XM_034299907.1 mRNA upstream 88446 17561445 ~ 17569232 (+) True LOC113526395
XM_026913797.2 mRNA upstream 99625 17552000 ~ 17558053 (+) True tmed1b
XM_026913524.2 mRNA upstream 132251 17513585 ~ 17525427 (+) False LOC113526467
XM_026911584.2 mRNA downstream 29242 17713371 ~ 17723802 (+) True pin1
XM_026911582.2 mRNA downstream 41804 17725933 ~ 17728564 (+) True LOC113525124
XM_034300132.1 mRNA downstream 53986 17738115 ~ 17740854 (+) True LOC117596147
XM_034300129.1 mRNA downstream 54212 17738341 ~ 17757199 (+) False LOC117596144
XM_034300134.1 mRNA downstream 62203 17746332 ~ 17751161 (+) True LOC113525113
XR_004577315.1 other upstream 802662 16822550 ~ 16855016 (+) False b3gntl1
TU446960 other upstream 1093162 16561383 ~ 16564516 (+) True G377269
TU446758 other upstream 1313054 16340768 ~ 16344624 (+) False G377132
XR_004577301.1 other upstream 1341293 16290730 ~ 16316385 (+) False LOC113537689
TU447578 other downstream 371495 18055624 ~ 18056805 (+) True G377747
TU447579 other downstream 378289 18062418 ~ 18068946 (+) True G377748
TU447580 other downstream 378289 18062418 ~ 18068946 (+) False G377748
TU447581 other downstream 378289 18062418 ~ 18068946 (+) False G377748
trnak-uuu_20 other downstream 435536 18119665 ~ 18119737 (+) True trnak-uuu_20

Expression Profile