RNA id: XM_034299953.1


Basic Information

Item Value
RNA id XM_034299953.1
length 2057
RNA type mRNA
GC content 0.42
exon number 4
gene id asf1bb
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16413949 ~ 16418007 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGCTTTTAGAGccataatctaaaaaaaaaaaaaaaaaaaggcagtgacTTTAAGGCACAcccgtgtgtttgtgttagttgGAGTGAAATTAGTGAGATGTTAAAGACTCCTGTGCAGTGGGAaaactgttttataataataattaaggggcaatttgtgttttttcccccaagtgtGTAACGTTAACAGCTAGCATAGTAACCAGGTTAGCTAGTTTTCTCAACCTGCTGTTAGACTGCGGCttatttacactgtttatatcGACCTCTGCCTTTTTTACATAGAAACCCGGGCACAGGAGACATTTACAGACATTAACAGACATTTACAGGAATATAAACAGCCACAGGCAGGTTTATGTTGCAGGTTTTTGGGGAATTATGGCGAAAGTGCAGGTGCTGAATGTGGCGGTTTTGGACAATCCGAGTCCTTTCTGTAATCCTTTTCAGTTTGAGATCACATTTGAGTGCATGGAGGATCTGCCTGAAGATCTGGAGTGGAAGATCATCTACGTGGGCTCGGCGGAGAGCGAGGAGTACGATCAGACGCTGGACTCGGTGCTGGTCGGCCCTGTTCCTGCAGGAAGAcacatgtttgtgtttcagGCAGACGCTCCGAACACGGGGCTGATTCCTGAAAGCGATGCAGTGGGCGTGACCGTGGTGTTAATCACATGCACGTATCGGGGTCAGGAGTTTATTCGCATCGGTTACTATGTCAACAACGAGTACACAGACCCTGAGCTGCGTGAGAACCCGCCCATCAAACCCAACTACACGCAGCTGCAGAGGAACATCTTGGCGTCGAACCCGCGTGTCACACGATTCCACATCAACTGGGAGACAATCGTGGACAAATCAGAGGACTCTGAGAATGTAGACCCCGCCCCCAACACCATGTTCCCACCCAGCTGCCCACCAGGAAAAGCTCCGGCTCTAGGACTCATGCCGGACAATTCTATGGACTGCTTATAGAGGGGGAgcgaatacacacacacacacacacacacacacacacacagtgtttgagCAGAATGATCACTCAGCACTCACAGGATGATTTTGGATGCACTTCTCCTCCTGAACACAGGGTGGCagtgaaggaacacacacacacacacacacacacacacacacacacacacacacacacacaccatgctgctCTAAAGTTCATCAGTGTGAATGTTACTTCTGCAAGTAGGACATGTTCTTGGATTAACATCCCCTGTCACACCAGTCACTGCCTTctgatgtcatcagtgtgcGCCTCTAACTCCGCCCACTCCAAGTCCACTCCAAGATACATCTCTGTGTGTAGCTCTGCCTTGTAGttcataaaattaattaatcaaaatgaaatgatgaaatattgaCCTGCAGTTAACTGTTAAGTTCAAATAATATCAGTAATATCAgtaataattagattttttgcATACCTAGCTTAGAAGTTTTTTGCATACCTAGCTCTAAAAGTTTCCTCTAAAATACGATGTTTTTTTACAAAGACGTTTCAGTATTGCACTATTCAAAATTTGAATACACGTAATActccattttttaaacatattttgatACACACTACAAAATCtgtatgttaatgtgtgtttacCATAGGCGGTAAGTGTGACACATTTCCCTGTATTGAGGAGGATAAAAATAGCAAACACATCGCTTTTATAATGGAGGTCTGACAACAACTCAAACAACTTTCCATTCTTTTATCAGTACAGGAAATGTGTCACTTACTGTCCAGTATAATCGTGCATATGCCATTATTTCATCATCAGGCCAGCCACTCAAGcaattaaagtttttttaaaacattattccaaaaaaaaaatcaataaataagaGCTTAGGTTGGGAAAGAAAATGCTTGAACAAAATCCTGAATTCATTAACGCAGCTGCACCTTTTTCATTCAAATTATTTAGTAGATTGTATTGGTAGTTATTTAGCTGCTTGAGCTAATGCTAGCTCGCTACACACACACGGTAAAAGAGTGCTAATTCAGGCTTGAACGGTCAAATGCGGCtttaaaaagaaacttt

Function

GO:

id name namespace
GO:0006333 chromatin assembly or disassembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10753 ASF1; histone chaperone ASF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446851 lncRNA downstream 23146 16389094 ~ 16390803 (-) True G377191
TU446816 lncRNA downstream 63490 16350249 ~ 16350459 (-) True G377172
TU446815 lncRNA downstream 63889 16349377 ~ 16350060 (-) True G377171
TU446750 lncRNA downstream 148302 16263903 ~ 16265647 (-) True G377125
TU446673 lncRNA downstream 192342 16216804 ~ 16221607 (-) False si:ch211-286b5.5
TU446915 lncRNA upstream 69783 16487790 ~ 16488131 (-) True G377244
TU447063 lncRNA upstream 161235 16579242 ~ 16581242 (-) False si:dkey-76b14.2
XR_004577292.1 lncRNA upstream 180906 16598913 ~ 16600222 (-) True LOC113547464
TU447074 lncRNA upstream 188323 16606330 ~ 16607547 (-) True G377359
TU447084 lncRNA upstream 203160 16621167 ~ 16741989 (-) False slc25a10
XM_026931886.2 mRNA downstream 2218 16398919 ~ 16411731 (-) True prkacab
XM_026931857.2 mRNA downstream 25742 16379306 ~ 16388207 (-) True samd1b
XM_026931919.2 mRNA downstream 40742 16368498 ~ 16373207 (-) True ndufb7
XM_026931890.2 mRNA downstream 65492 16341237 ~ 16348457 (-) True dnajb1b
XM_026931865.2 mRNA downstream 167658 16238209 ~ 16246291 (-) True LOC113537406
XM_034300234.1 mRNA upstream 3254 16421261 ~ 16475431 (-) True LOC113537389
XM_034300087.1 mRNA upstream 79778 16497785 ~ 16525406 (-) True LOC113537390
XM_034300088.1 mRNA upstream 115827 16533834 ~ 16559160 (-) True LOC117595682
XM_034300089.1 mRNA upstream 148246 16566253 ~ 16583137 (-) True si:dkey-76b14.2
XM_026931872.2 mRNA upstream 165372 16583379 ~ 16589630 (-) True zgc:65894
TU446672 other downstream 249579 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 258468 16152919 ~ 16155481 (-) False zgc:158803
TU446429 other downstream 471263 15933637 ~ 15942686 (-) False khsrp
TU446479 other downstream 493396 15917628 ~ 15920553 (-) True G376956
TU446067 other downstream 956866 15455779 ~ 15457083 (-) False dpy30
XR_004577334.1 other upstream 7447 16425454 ~ 16475431 (-) False LOC113537389
TU447143 other upstream 427005 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 427005 16845012 ~ 16845602 (-) False G377416
TU447682 other upstream 764725 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 848222 17266229 ~ 17268030 (-) True G377862

Expression Profile