RNA id: XM_034300024.1


Basic Information

Item Value
RNA id XM_034300024.1
length 2277
RNA type mRNA
GC content 0.45
exon number 15
gene id wu:fa56d06
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5549553 ~ 5557090 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGCGTATCTTAATCAGGTTCAGTGTGCTAACTGCACATGCTGCGTGAAACCTGAGCATCTCGCTCAAGATTTTATCTATTGGAGACATGTTAAAATTTGTGTTGCTACTCTGTGTTGCTGTGGCTGgCTCTAATGCTAGACCTTTGCAATATAATACTCTTCGTATCCAAAATGGTGGATGGGTCATTGGAGCCCCACAGCTGGTACAAAATGGGCAAGAATACATGGGGAACTTTGGATCTGCTGAACACCATAGACAGGACACAAACGcTGAACCTCAGTGGGAAGTTGTTCTTGCTCCAGAGCATACAGAAAAGATGCAAGATGATATGAACCAGAAAGTTGCTCCCACTGAGGAACACAGACAAGGCACTGAACCATCTAGGCGCTTCTTGGTGGACCTGAACACCGGCTTGTTAAAGGAATACATCAGTGAGATGGACAGGAGTGTTGAAGTCTACAATCCTGCATCCAATTCTGCGTTCAGACAGGGCACTCAGAACTCTTGTGTAACTCTGGTGGACGTTAGAACAGGGCAACGGTTGCCTCAGCTGTCAGAGATGCAGAGGAGAGCAGCACcatTGTCTCAGTTCAGACAAGGCACAGAGTACAATGAGGCACTGTTGATGGAACTCAGGAAGGCCCAGATGATTGAGAGCATGGAAACAGCCAAAGTTAGCAAACAGGAAACCACCCACAAATCAGTTCTACCTGAGCTCCGCAGACAAGGAACAGAACCTTCTAGACGCTTTCTTGTGAACCCAAACACTGGATTAGTAAAGGACCATGTCAGTGAGATGGAAAGAAGAATTTCAGGCTTCTACAATCCTGCATCCAATTCTGCATTCAGACAGGGCACTCAGAACTCTCGTGTAACTCTGGTGGACACTAGAACAGGGCAGCAGTTGCCCCAGATGTCAGAGATGCAGAGGAGAGCAGCACCATTGTCTCAGTTCAGACAAGGCACAGAGTACAATGAGGCAATGTTGATGGAACTCAGGAAGGCCCAGATGATTGAGAGCATGGAAACAGCCAAAGTTAGCAAACAGGAAACCACCCACAAATCAGTTCTACCTGAGCTCCGCAGACAAGGAACAGAACCTTCTAGACGCTTTCTTGTGAACCCAAACACTGGATTAGTAAAGGACCATGTCAGTGAGATGGAAAGAAGAATTTCAGGCTTCTACAATCCTGCATCCAATTCTGCATTCAGACAGGGCACTCAGAACTCTCGTGTAACTCTGGTGGACACTAGAACAGGGCAGCAGTTGCCCCAGATGTCAGAGATGCAGAGGAGAGCAGCACCATTGTCTCAGTTCAGACAAGGCACAGAGTACAATGAGGCAATGTTGATGGAACTCAGGAAGGCCCAGATGATTGAGAGCATGGAGACAGCCAAAGTTAGCAAACAGGAAACCACCCACAAATCAGTTCTACCTGAGCTCCGCAGACAAGGAACAGAACCTTCTAGACGCTTTCTTGTGAACCCAAACACTGGATTAGTAAAGGACCATGTCAGTGAGATGGAAAGAAGAATTTCAGGCTTCTACAATCCTGCATCCAATTCTGGGTTCAGACAGGGCACTCAGAACTCTCGTGTAACTCTGGTGGACACTAGAACAGGGCAGCAGTTGCCCCAGATGTCAGAGATGCAGAGGAGAGCAGCACCATATGGTTTCAGACAAGGCACTGAGTACAATCTGCTGACCTTGTTGAATCTCAGGAATGCACAGATGATACACACCAAAGACAGCAAAGATAAAACCCCACACACTGTACAGGACATGGAAACCAATGAGGtgtttCCTGAGTTCAAACGTGGCATTGAATATTCACAAGCTCAAAGACAACAGATCATGGATCAACACCTTTTCCAAGCTCTAGAAAGTAATGAAGTGGATATTTCACCCCCATTGGAAGAGTTCAGACATCATATGGATTACAGCTATGGTAATGTAATAGATAGACGAATCATGGAGCCTTCTTATGTGAAGCAAAGTGATGAAGTTTCGACCTGTCAAGGAGAGGTTATTGCTGGCAAATGCTATATTTTCAAACCAAAATTACAGACCTTCGGTGAAGCTGAAGATGTTCAGAATTGATGAAAGCTGGTGGACAGCAGTAGCCTGTGGCCTGAAAACAGTGTAAAAATCTCAGAGGAACAAAACCATCTGTCTTATCAAATGATTATACACTGGTTTGCCTAACTAGGAAGAggatgtttttatctgaaataatTCACAATCTCTTAATGTTTTTcaacaaaataaagaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577342.1 lncRNA downstream 31173 5510716 ~ 5518380 (-) True LOC117596170
TU439411 lncRNA downstream 41184 5508102 ~ 5508369 (-) True G370942
TU439410 lncRNA downstream 43236 5506112 ~ 5506317 (-) True G370941
XR_003403776.2 lncRNA downstream 120121 5415626 ~ 5429432 (-) False LOC113537576
TU439645 lncRNA upstream 323386 5880476 ~ 5885612 (-) True G371117
XR_004577356.1 lncRNA upstream 329756 5886846 ~ 5891797 (-) True LOC117596178
TU439651 lncRNA upstream 335236 5892326 ~ 5895688 (-) True G371121
TU439680 lncRNA upstream 436399 5993489 ~ 5994747 (-) True G371147
TU439686 lncRNA upstream 440913 5998003 ~ 5998159 (-) True G371152
XM_034300297.1 mRNA downstream 2521 5535285 ~ 5547032 (-) False LOC113537235
XM_026931629.2 mRNA downstream 2521 5535285 ~ 5547032 (-) False LOC113537235
XM_026931628.2 mRNA downstream 2521 5535285 ~ 5547032 (-) True LOC113537235
XM_026931627.2 mRNA downstream 2522 5529992 ~ 5547031 (-) False LOC113537235
XM_026931631.2 mRNA downstream 2522 5534415 ~ 5547031 (-) False LOC113537235
XM_026931827.2 mRNA upstream 32682 5589772 ~ 5596095 (-) False n6amt1
XM_034300092.1 mRNA upstream 32682 5589772 ~ 5595936 (-) True n6amt1
XM_026931654.2 mRNA upstream 339246 5896336 ~ 5908867 (-) False jam2a
XM_026931653.2 mRNA upstream 339246 5896336 ~ 5908867 (-) True jam2a
XM_026931713.2 mRNA upstream 356869 5913959 ~ 5920199 (-) True mrpl39
XR_004577341.1 other downstream 2521 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other downstream 2521 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other downstream 2521 5534415 ~ 5547032 (-) False LOC113537235
XR_004577339.1 other downstream 2521 5534472 ~ 5547032 (-) False LOC113537235
XR_004577340.1 other downstream 2521 5536781 ~ 5547032 (-) False LOC113537235
XR_003403780.2 other upstream 385339 5942429 ~ 5952313 (-) False LOC113537623
XR_004577328.1 other upstream 462597 6019687 ~ 6033393 (-) False tpp2
XR_004577329.1 other upstream 801549 6358639 ~ 6363203 (-) False LOC113537742
XR_004577289.1 other upstream 1501745 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 1501745 7058835 ~ 7068531 (-) True LOC113537271

Expression Profile