RNA id: XM_034300027.1


Basic Information

Item Value
RNA id XM_034300027.1
length 2008
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC113537617
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14953561 ~ 14958201 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTACGTAGTTTAGTGACTCAGCATAAAAATGGGGAATTCTTCAGGGACTTGGCAGGCTTATATATGGCAGGTAAGAGGCTCAGTACCTGCACAAGATAACTGACGAGACACAAGCAGACTGCAGTATGAAGATCCGTGTCGAGGTCCAGCTGTTGGCGATGGTGGTTGCGCTGTACCTGGCTTTAGGTATGAGTGACGGCCTGGTGATAGACAAGTGTGAACTGGGGGACGAATTGAACTCGACCCTACCTGCAAACCTTTTGGACCAGATCACCAACCTGGTGGCCAAGATTGTGTGCCATGTGGAGCTGAGCTCTCACTTCAACACCAGCACCATCAATCATATCACTGGACCCAACATTCAAAGTTTCATCCGTGGAGGTCATGGAGGACGCAAGAGCAGGTCTGCAGAGTCAAGCAGTGAGGAGTCCAGTGAAGAAGACTCATCCAATGGTGCAGGACACCGAAAGATATCTGCATCGGGGTCCAGCAGTGATGAGTCCAGTGAGGAAGACATCCAGGTGCCTAAACGTGGTTTCAATTCTTCGATGGTTAATCCAGTCACTCATCCTCATGGTAACAACTCATCCAGCGGAGGAGGTCATGGAGGACGCAAGGGCAGGTCTGCAGAGTCCAGCAGTGATGAGTCCAGTGAGGAAGACATCCAGGTGCCTAAACGTGGTTTCAATACTTCGATGGTTAATCCAGTCACTCATCCTCATGGTAACAACTCATCCAGCGGAGGAGGTCATGGAGGACGCAAGGGCAGGTCTGCAGAGTCCAGCAGTAAAGAGTCTGAAGAGAGAACCACGTGGACTTTGTACGGGTTGTTCCAGCTGCCCGGTCACATTGCCTGCACCTCTGGGCTTGAACCCTCTCTCAACGTCTGCAGTATGGCCTGTGACAAACTGATCGATGACAATATCAGAGATGACATCACCTGTGTTGAGACCATCATCaaaaaaatGTTGTCAGAAGGAAGGAGTCATGGTCCAAATAAAGCAGTTTTCAGCAAATTGTTAGCTTCTTTCTTCCAGAAGGAGTGCAAGAATGTGGAGGACTTTGAGTACTTCTCCACTTGTTAAAACAGACTGCAGGCCAAGCAAACATCTCGACTCAATTCTACTCAAACAATTTCACTTGTtaactaaattttaaattaaaaaacaattacaatcaCACAATTTTGATAGATTATGGCTACACTGAGTTAATTAACCCTGGGTTAAATTAGTGGTCACGTGATCGCACTTCAACACACTGAATGAGTCGGGAGCACACAGCCGTTTTAGCCTGTAGCATGCcatgaatttctttcttttcctcctcatGTCTACTTCATTATCAATTTATTATTCCTGACTGATCAATATCTATGATTATCACAGAATTCCTGTTGTGTATTTAGTCTGAAAACAGAGCTGCCTCTAAGGTATTCCGTCATATCCGCTTGTGTGTTATAAAAAAGatcaaaattttattaaattggcCAAGAGGAAGGGAGAAAACTGTCAGAGTAAAAATGTATCTTAATTGGCACGACGTCGCAACTCGTTTGCTAATTGGCAAGATGTCGGGACAGCATTGTTTTTCAGCCAAGCTTCCGTGTAATATGTGATTTAGGCTCCCTTATTTAACAACATAATTTTCTAATAAGAACATACATTAACTAAACTTTTAACCCAAATCCATTGACATCTTCCCAATTAGCAAACGAGTTGCACGTGTCGTCATTGAGACGTCATTTGAGACGTCatttctgcgtgtgtgtgtgtgtgtgtgtgtgaaagcgtGTTACCTGGGATCTGGATTAAGTGGGTTAAATAGTCTATTTGGCCACACAAGAACAGACAccaacacagatttatttttgccAGCTGAGacaagacaaagagagaaaagttCTAATAAAACCAGATAAGTGTTAAGTTTCAAAAGAATATGCTGTtaattttatcctttttttcccccctgccTTTTCATGTTCAATTTCTTCTCTCATTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445468 lncRNA downstream 212012 14740261 ~ 14741549 (-) False b3gnt2a
TU445465 lncRNA downstream 213754 14739369 ~ 14739807 (-) True G376171
TU445467 lncRNA downstream 213754 14739480 ~ 14739807 (-) False G376171
TU445429 lncRNA downstream 269233 14682387 ~ 14684328 (-) True G376143
TU445412 lncRNA downstream 292250 14657946 ~ 14661311 (-) True G376127
TU445691 lncRNA upstream 76968 15035165 ~ 15035466 (-) True G376364
TU445961 lncRNA upstream 86515 15044712 ~ 15045359 (-) True G376574
TU445990 lncRNA upstream 140819 15099016 ~ 15101012 (-) True G376602
TU445995 lncRNA upstream 159315 15117512 ~ 15117893 (-) False triobpa
TU446002 lncRNA upstream 173820 15132017 ~ 15132290 (-) True G376608
XM_034299873.1 mRNA downstream 19058 14910662 ~ 14934503 (-) False akt3b
XM_034299872.1 mRNA downstream 19058 14910662 ~ 14934503 (-) False akt3b
XM_034299870.1 mRNA downstream 19058 14910662 ~ 14934503 (-) False akt3b
XM_034299871.1 mRNA downstream 19058 14910662 ~ 14934503 (-) False akt3b
XM_034299875.1 mRNA downstream 19613 14910662 ~ 14933948 (-) False akt3b
XM_026932137.2 mRNA upstream 102724 15060921 ~ 15072345 (-) True spast
XM_026932138.2 mRNA upstream 102724 15060921 ~ 15072344 (-) False spast
XM_026932164.2 mRNA upstream 116474 15074671 ~ 15077616 (-) True rln3b
XM_034300392.1 mRNA upstream 145980 15104177 ~ 15113293 (-) True dcaf15
XM_034300393.1 mRNA upstream 145980 15104177 ~ 15113156 (-) False dcaf15
TU445400 other downstream 241184 14697239 ~ 14712377 (-) False ifngr1
TU445430 other downstream 269233 14683102 ~ 14684328 (-) False G376143
XR_004577346.1 other downstream 678431 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 914575 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 914963 14038528 ~ 14038598 (-) True LOC113537774
TU446065 other upstream 497582 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 497582 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 497582 15455779 ~ 15457083 (-) False dpy30
TU446479 other upstream 959431 15917628 ~ 15920553 (-) True G376956
TU446429 other upstream 975440 15933637 ~ 15942686 (-) False khsrp

Expression Profile