RNA id: XM_034300032.1


Basic Information

Item Value
RNA id XM_034300032.1
length 1758
RNA type mRNA
GC content 0.49
exon number 2
gene id en1b
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1512321 ~ 1518371 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCACGGGCCGCGGAGCATCACCGACCgccatgtgtgtgagtgtgttttgatCCTCGAGACGCGCTGAGAAAAAACAAAtctctataaataaatgaataaataagtgaaaagGTGCGCGAGGCATTCCGATGGTGCAGCGGCTTCAAGGTGCATCTAGAGATTGAAGATAATCTGCAGTTTTTTACTCCAGGATAAATATTTTGGTGGCAACAAGtgggatttttttgttgttattgctgttgttgttgttgttgttgttgttgaaacaaaaataaataaatggaggaGCGGAAGGATCCGTCCGAGCGCGAGAGCGCGTCCCCTCCGGTTCTAGCGCGCGAGGCGGCGCCGCAGGTCCACCGCACCACGAACTTCTTCATCGACAACATCCTGCGGCCCGACTTCGGCTGCAAGCGCGAGCTCCTCTCGAGCAGGGAAAACGTCAGCCCGCTGGTCGCGAGGCCGTCATCGCGCGCGGACTCCACCGCCGACCACCGCACTTcatcgtcttcttcttcttcttcatcttcatcttcttcttcctcttcttcttcctcgtcTCCGTCGTCTTCGTCGTCTTCCTCGTCGTCGTCCAAGGTGCTGGTGGAGGGAAGCACGAGGTGCGGAGACGGCTCGAATCTCACGGCGGTGAACGGCGCGAGCGGCGGcggaggtggtggaggaggtggaggaggtggaggcgcagcagcagcagcaggaacaacaacaacaacaaccacaagcACGGCGGCGGCCAAAGACAGCACACAACCTCTGCTGTGGCCCGCGTGGGTCTACTGCACGCGCTACTCGGACAGACCCTCATCCGGACCGAGGACCCGgaagctgaagaagaagaagagcgaCAAGGAGGACAAGCGGCCGCGCACCGCCTTCACGGCCGAGCAGCTGCAGCGGCTCAAGGCGGAGTTCCAGGCGAGTCGCTACATCACGGAGCAGCGGCGGCAGTCGCTCGCGCAGGAGCTCAACCTCAACGAGTCGCAGATCAAAATCTGGTTCCAGAACAAAAGAGCCAAGATCAAGAAGGCGAGCGGCTACAAGAACGGACTGGCGCTGCAGCTGATGGCGCAGGGACTCTACAACCACTCCACCACCACCGTCCAGGAGGACAAGGAGGACAGCGAGTAGCAGCGTGCACGAGCAGCCTGAGGCTGGGGATTAATCCTCtttcaataacagcaacaataaacCTGTtcataattttcttcttctccatgaattttatttaaaaatagcgATCGGCGCAATTactaggggtccaagcaccaaataTACTGGAAAcctcctattattattattattattattattattattattatttggagaAGAAGATTATTATCACtgatctcctcctcctcctcctcctcctcatagcctcatctcctcatctcctCATTTCATCCATCTTTTCACTGATATCTAAAAAAAGAGACGctgaggactttttttttttttttttttttttaggagattCATATAAAACGCGGAGTTTCATGGACGCTGACCCAAAGCGACCTTCTGACATGAAGAAGAGGACAAGAATTCCTTATTTAATTCTGTACAAATATATGGACTCTACGAAgatttctataaatataaatataaatatatatatatataatagccAAAATTGTaagatgtatatatttaaaattcagGTAAGGCTGAGACGTGTGTGTTTCTCCTTACTTGCTGgcaatttgttcttttttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048663 neuron fate commitment biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437520 lncRNA downstream 115416 1396604 ~ 1396905 (-) True G369305
TU437512 lncRNA downstream 115723 1370134 ~ 1396598 (-) True G369297
TU437517 lncRNA downstream 126659 1384921 ~ 1385662 (-) True G369302
TU437513 lncRNA downstream 137108 1365363 ~ 1375213 (-) True G369298
TU437449 lncRNA downstream 234671 1277073 ~ 1277650 (-) True G369243
TU437748 lncRNA upstream 19706 1538077 ~ 1588650 (-) True G369523
TU437747 lncRNA upstream 23119 1541490 ~ 1611666 (-) False nrp2a
TU437818 lncRNA upstream 257948 1776319 ~ 1795224 (-) False G369586
TU437802 lncRNA upstream 267182 1785553 ~ 1823504 (-) True G369573
TU437828 lncRNA upstream 284738 1803109 ~ 1805302 (-) True G369596
XM_026928712.2 mRNA downstream 146415 1355723 ~ 1365906 (-) True LOC113535431
XM_034300143.1 mRNA downstream 266280 1204764 ~ 1246041 (-) True slc5a10
XM_034300142.1 mRNA downstream 321773 1167628 ~ 1190548 (-) True LOC113535776
XM_026928797.2 mRNA downstream 398722 1052390 ~ 1113599 (-) True cacna1hb
XM_034299982.1 mRNA downstream 486300 987755 ~ 1026021 (-) True myo15ab
XM_034300164.1 mRNA upstream 20082 1538453 ~ 1599742 (-) False nrp2a
XM_034300165.1 mRNA upstream 22991 1541362 ~ 1599744 (-) True nrp2a
XM_034300163.1 mRNA upstream 100449 1618820 ~ 1738935 (-) True pard3ba
XM_034300044.1 mRNA upstream 307774 1826145 ~ 1832729 (-) False mdh1b
XM_034300043.1 mRNA upstream 307871 1826242 ~ 1832729 (-) False mdh1b
TU437448 other downstream 235508 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 596638 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 1285219 202654 ~ 227102 (-) True si:dkeyp-75b4.8
XR_004577318.1 other upstream 22991 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 273816 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 1048386 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 1324841 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 2939064 4457435 ~ 4457541 (-) True LOC113535829

Expression Profile