RNA id: XM_034300046.1


Basic Information

Item Value
RNA id XM_034300046.1
length 4403
RNA type mRNA
GC content 0.37
exon number 7
gene id LOC113537690
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16224807 ~ 16236147 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGGAAGGGAAAGAGTGCTGCTGTTACTGAATTATTTTCAAAGTAAATTGCTTATGATGCTTTTAGTCAAGTTGGAAAACAACTGATTCGGAGTTAGTAAAACATTTTTCgcagaagaaaaaagtgtgaaaagtaACTGCGGTTAAGCCTCTCTTCCTGAAAGCGTGGTTAATGCAACGGACACCCAACCATTCACAAAGCTAAAAATTGTGTGACGCTAAACAAGAAGTGAAGGAGCAACTGAACCAAACACCTCTGAAGAAGAATAACATCTTCAGAAGagTTTTTCTACCAGTGTCATGGAGGTCTCATATGCTGACTCTGACCCTGATTCATACTCTGTTGTACATAAACCAACTAGGATAAACCCACCACGGAGTGCAAAGAGACAGGGGTCCAACAGTCAATCAGCAAAAGAGCAaagttatatatacatacagacaaTAGATTATGACTCTTCAGCCCTGCCACCCAATTTTAGTGAAGATGAGCAAGAGGACTCCAACAGTTCAAGACAACAAGAAAAGAGGATAAAAGAGAAACAAGGAGAAGgacaagagaagaaaaagatgtCTGACAAGTTAAAGGAAATGACAAAGGAGAAGACTAAAATGGAAGAGAAGAACTCGCAACTTCAGAGAGTGTTACAGGAGCTGAATAAAAAGAAGACTGAAATAGAAGAGAAGAACTCGCAACTTGAGAGAGTGTTACAGGAGGTGAATAAAAAGAAGACTGGAATGGAAGAGAATTTACAGGAGGTGAATAAAAAGAAGACTGGAATGGAAGAGAATTTACAGGAGGTGAATAAAAAGAAGACTGAAATGGAAGAGAATTTACAGGAGGTGAATAAAAAGAAGACTGAAATGGAAGAGAAGTTACAGCAGGTGAATAAAAAGAAGACTGAAATGGAAAAGAATTTACAGGAGGTGAATAAAAAGAatactgaaatgaaaaagaatttaCAGGAGGTGAATAAAAAGAatactgaaatgaaaaagaatttaCAGGAGGTGAATAAAAAGAAGACTGAAATGGAAAAGAAGTTACAGGAGGTGAATAAAAAGAAGACTGAAATGGAAGAGATGTTACAGGaggtaaataaaaagaagactgAAATGGAAGAGAAGTTACAGGAGGTGAATAAAAAGAAGACTGAAATGGAAGAGAATTTACAGGAGGTGAATAAAAAGAAGACTGAAACGGAAGAGAATTTACAGGAGGTGAATAAAAAGAAGACTGAAATGGAAGAGAAGTTACAGGAGGTGAATAAAAAGAAGACTGAAATGGAAAAGAAGTTACAGGAGGTGAATAAAAAGAAGACTGAAATGGAAGAGAATTTACAggaggtgaaaaaaaagaatactgaAATGGAAGAGAATTTACAGGAGGTGAATAAAAAGGATACTGAAATGGAAAAGAATTTACAGGAGGTGAATAAAAAGAAGACTGAAATGGAAGAGAAGTTACAGGAGGTGGATAAAAAGAATACTGAAATGGAAGAGAAGTTACAGGAGGTGGATAAAAAGAAGACTGAAATGGAAGAGAATTTACAGGAGGTGAATAAAAAGAAGACTGAAATGGAAGAGAATTTACAGGAGGTGAATAAAAAGAATACTGAAATGGAAAAGAATTTACAGGAGGTGAATAAAAAGGATACTGAAATGGAAAAGAATTTACAGGAGGTGAATAAAAAGAAGACTGAAATGGAAGAGAAGTTACAGGAGGTGGATAAAAAGAAGACTGAAATGGAAGAGATGTTACAGGAGGTGAATAAAAAGAATACTGAAATGGAAGAGAAGTTACAGGagatgaataaaaagaagactGAAATGGAAGAGAATTTACAGGAGGTGGATAAAAAGAAGACTGAAATGGAAGAGAAGTTACAGGAGGTGGATAAAAAGAAGACTGAAATGGAAGAGAATTTACAGGAGGTGGATAAAAAGAAGACTGAAATGGAAGAGATGTTACAGGAGGTGAATAAAAAGAAGACTGAAATGGATGAGAATTTACAGGAGGTGGATAAAAAGAAGACTGAAATGGAAGAGAATTTACAGGAGGTGGATAAAAAGAAGACTGAAATGGAAGAGAATTTACAGGAGGTGAATAAAAAGAAGACTGAAATGGAAGAGAATTTACAGGAGGTGGATAAGAAGAAGACTGAAATGGAAGAGAATTTACAGGAGGTGGATAAGAAGAAGACTGAAATGGAAGAGAAGTTACAGGAGGCAGAACATAGAAACAGAAAATTAAAGATAGCCTCTGTGCTGGTTCTGGTTCCACTGTGTATTGGATTTCACTTAGCTTTCAAAGGGCATGAGATGAACCATCTTGAGCTTAGACTGATGTTGGTGGGGAAAACTGGAGCAGGAAAGAGTGCATCAGGAAACACCATCCTGGGTGAAGAGGCCTTTAGAGTCGAGGCGTCTCCTGCGTCTGTGACCGCAAGCTGTATGAAGAAGAACAAAGTCTTGGATGGAAGAAACATCACCATAATTGACACTCCGGGTGTCATGGACACGTGGCTAATATCTAACCAAACAGCCCACAGTGCACATGAATGTATCTCCATGTCTTCTCCTGTTCCTCATGTGTTCCTTCTGGTAATCAGACTGGGAAGATTCACGGTGGAGGAGCGCAATGCTGTGAAGTGGATTCAGGAGAACTTTGGAGAAGAAGCTCTGATGTTCACCATGATTCTGTTCACTGGTGGAGATCTGCTGGAAGGGAAACCAGTGGAGAAATTTATCAGTAATAGTTATGATCTCCAGAATCTTGTAGACACCTGCGAAGCTAGATATCATGTTTTTAACAACTACGAACAAAGTAACCACACTCAAGTCACAGAGTTGTTTGAAAAgataaatgtattactgcacAAGAACATGGGTTACTTTTACACAAAAGAGGTTCATCAGAAGGTCCAGAGAAGCAccagagaagaggaagagagaaagagagtgattttagagaaagagattaaaatggaggaagagagaaagagagccaaGGTGGAAAAAGTGatcagagaagaagagaaaattaATTTTGAAGAGCGAGCAAATGAGGTGAAAGAGGAGGCACAGAGAGAGTGtaacagcagagagagagaaatcagacAGGAAGAGGAATTACAGAGGAACCAGCAGAAAGAAGAGATGGGAGTGGAAGAGAGGAGGAAGATTAATGAGATGGCAATTAAACTAAGAGATGAGCAATACGAGAACAAAAATCTTAAAGAAGAGTTAGAACAGGCATATAGTACATCTTTCTGGTTCAAGGTCTCAACTGGCATGCTCATTCTAATTCTGATCACTGTGGTGtgtttaagaaaagaaaatagctGAACCATTGGGAGATTTTCACAAATAACCAGGCCAAGGcttaaaatagaataataaaatagagCAAATTGAAATTAACCTCACCCATTTTCCCAGTTCAAATATGGCCTtacaaatgataataatgatttgCAGGACCCAACATGCATATAAAGTTTTGAATGTTGTTTTAGGGTGGTGTTAGTACTTGTGGCTTTAATTAAACTTTCGTTGCAACACTCTAAATGAaaagacattcattcattcaaatgaaAGAGAGCACCATGTCGgacatgtcatttattttatgattttttttattgaactaAATGCCTGAAACTGTTAATTTGTTcaaattacagattacagatttGTTCAAAATCTCATCCGAGATTTTCAGTAGCaagatatctcaagaacaagaggttgatgtttgtaggatttatatggaattatcatcgCAACCAGCAGATGAAATGATTAGATTTTGCAATTAATCCAAGCACGGTCAAGGTCACAGGTCAAAtgtctggtaaaaaaaaagtgatttttcagtagcttttttcctgtttgtcatacagatATGTGTTCAGAAATGCAAGGCCCATTTTTCGGCTAGCTGAGATTTTTGCTATCAGTccgtctgtgtgtctgtctgtttgtctgtccgAGATTCTTGTTAGcgcaatatctcaagaacaagtggttgaatgtttgtaggatttatttggaattatcactgtaaccagcagatcaGCTGATTCGATTTTTTTGAATTGATCccaacagggtcaaggtcacagcaaggtcaaatgtctaaaatagtttttcttcaatagtgTCCTTCGTGttcaaagtatttttatttctggcattcaaattagtaacaagaaggaccaGGCTTGGTGGCGGAGGCGTCCCTATCAACGCCATTGGCGTCAAGTTCAAcgtgtttttgatttttgtaTAGCTTGTCAATTATCCCTGGAATGGACTTGTGTACAATCCAGGCACAAGCGATTGCTTTAGGACTGGATGTGAAAATGTGTCAATAAAATGTctctatattaaatgtaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446673 lncRNA downstream 3200 16216804 ~ 16221607 (-) False si:ch211-286b5.5
TU446675 lncRNA downstream 45685 16178610 ~ 16179122 (-) True G377084
TU446676 lncRNA downstream 45685 16178662 ~ 16179122 (-) False G377084
TU446680 lncRNA downstream 55611 16165698 ~ 16169196 (-) False G377087
TU446750 lncRNA upstream 27757 16263903 ~ 16265647 (-) True G377125
TU446815 lncRNA upstream 113231 16349377 ~ 16350060 (-) True G377171
TU446816 lncRNA upstream 114103 16350249 ~ 16350459 (-) True G377172
TU446851 lncRNA upstream 152948 16389094 ~ 16390803 (-) True G377191
TU446915 lncRNA upstream 251644 16487790 ~ 16488131 (-) True G377244
XM_026931922.2 mRNA downstream 3192 16216750 ~ 16221615 (-) True si:ch211-286b5.5
XM_026931868.2 mRNA downstream 8773 16209255 ~ 16216034 (-) False si:ch211-286b5.4
XM_026931865.2 mRNA upstream 2063 16238209 ~ 16246291 (-) True LOC113537406
XM_026931890.2 mRNA upstream 105091 16341237 ~ 16348457 (-) True dnajb1b
XM_026931919.2 mRNA upstream 132352 16368498 ~ 16373207 (-) True ndufb7
XM_026931857.2 mRNA upstream 143160 16379306 ~ 16388207 (-) True samd1b
XM_026931886.2 mRNA upstream 162773 16398919 ~ 16411731 (-) True prkacab
TU446672 other downstream 60437 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 69326 16152919 ~ 16155481 (-) False zgc:158803
TU446429 other downstream 282121 15933637 ~ 15942686 (-) False khsrp
TU446479 other downstream 304254 15917628 ~ 15920553 (-) True G376956
TU446067 other downstream 767724 15455779 ~ 15457083 (-) False dpy30
XR_004577334.1 other upstream 189308 16425454 ~ 16475431 (-) False LOC113537389
TU447143 other upstream 608866 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 608866 16845012 ~ 16845602 (-) False G377416
TU447682 other upstream 946586 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 1030083 17266229 ~ 17268030 (-) True G377862

Expression Profile