RNA id: XM_034300104.1


Basic Information

Item Value
RNA id XM_034300104.1
length 4941
RNA type mRNA
GC content 0.46
exon number 21
gene id dnm2b
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17588633 ~ 17612874 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTATGGAAGTTTTATGACAGTCGCCTGACCGGATGGGAAAAGTTGTCGGTTTTTTCCGTTATTTTTCAGCATTAGGTTCAGTAACATCAGTATTTCTATAAACTTTTCCACACAGCAGTGTTTTCTGAACTACACTCAGGCTTTATAATGCGTTTATAACGCTGGACTGTAGGTCAGGAGAAGGTTTAGCAGCTGCAGTGTGGGTTTATTGGGACAGAGCTGGGAGAAAGTTGCTGAGGGCAGCATGGGGAACCGCGGCATGGAGGAGCTCAtccctctcatcaacaagctccAGGACGCCTTCAGCTCCATCGGCCAGAGCTGCAACCTCGACCTGCCGCAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCCGTGCTGGAGAACTTCGTGGGCAGGGATTTTCTTCCCCGAGGTTCTGGTATTGTCACTCGTAGACCCCTCATCCTTCAGCTGGTCAACCACaaagcagAATATGCCGAGTTCCTGCACTGTAAAGGTCGGAAGTTTGTCGACTTTGACGAGGTGCGGCTGGAGATCGAGGCCGAGACGGACCGCATCACCGGCTCCAATAAAGGAATCTCACCCATTCCCATCAACCTGAGAGTGTACTCTCCTaatgtgctGAATCTGACTCTGATTGATCTTCCCGGTATGACGAAGGTTGCCGTCGGCGACCAGCCGCCAGATATCGAGTTCCAAATAAGggacATGCTGCTGCAGTTCATCACGAGGGACAGCTGTCTGATTCTGGCCGTCACTCCTGCCAACACCGACCTCGCCAACTCCGACGCGCTCAAGATCGCCAAGGAGGTCGACccccaggGTCTGCGCACCATTGGTGTGATCACCAAACTGGATTTGATGGATGAGGGGACGGATGCCCGAGATATCCTGGAGAACAAACTGCTGCCTCTGCGTagaggctacATTGGCGTGGTGAACCGCAGTCAGAAGGACATCGATGGCAGGAAGGACATCCGCGCTGCTCTGGCAGCCGAGAGGAAGTTCTTTCTGTCTCACCCTGCATACAGACACATGGCCGAGAGGATGGGAACTCCGTACCTGCAGAAAACACtcaaccagCAACTGACGAATCACATCCGCGACACGCTGCCCAGCCTGCGCAGTAAACTGCAGAGTCAGCTGCTCTCTCTGGAGAAGGAGGTGGAGGAGTACAAGAACTTCAAACCTGATGATCCAACACGCAAAACTAAAGCCCTGCTGCAgatggtGCAGCAGTTCGGAGTGGACTTTGAGAAGAGGATCGAGGGTTCTGGTGATCAGGTCGACACTCTGGAACTTTCTGGAGGAGCTCGAATCAACCGCATCTTCCACGAGCGCTTCCCCTTCGAACTCGTCAAGatGGAGTTTGATGAGAAAGAACTGAGGAGAGAAATCAGCTACGCAATTAAGAACATACATGGTGTGAGGACGGGCTTGTTCACCCCAGACCTGGCGTTCGAGGCCATAGTGAAAAAGCAGATCGTTAAGCTGAAGCAGCCATGTCTCAAATGCGTGGACCTGGTCGTGTCCGAACTCTCTGCTCTCACCCACAAGTGCATGGAGAAGCTGAGTTCATATCCTCGACTGAGAGAAGAGACCGAGAGGATCGTCACCACCTACGTCAGAGAGAGGGACAGCAAGACTAAAGAACAGgTGATGCTGTTGATTGACATCGAGCTCTCCTACATCAACACCAATCATGAGGACTTCATTGGTTTTGCGAACGCCCAGCAGAGTTCCGCTGTCACCAAGAAGAGAGCCGTTCCCAACCAGGTGATCAGGAAGGGTTGGCTCACGATCAACATCAGCATAATGAAGGGTGGCTCTAGGGACTACTGGTTCGTCCTGACTGCCGAGTCACTGTCCTGGTACAAGGacgaggaggagaaagagaagaagtaCATGCTCCCGCTGGATAACTTGAAGATGAGAGATGTGGAGAAAGGCTTCATGTCCACCAAACACACCTTCGCTATCTTTAACACtgagcagaggaacgTGTATAAAGACCTGCGTCAGATCGAGTTGGCGTGCGACTCTCAGGAGGACGTGGACAGCTGGAAGGCCTCGTTCCTGAGGGCAGGAGTGTATCCCGAGAAAGACCAGGTGGAGAATGGTGAGGGGGCTCCAGCAGACACCTTCTCCATGGACCCTCAGTTGGAGCGACAGGTGGAGACGATCCGGAACCTCGTCGACTCCTACATCGGCATCGTCAACAAGAGCATTCGAGATCTCATGCCCAAGACCATCATGCACCTCATGATCAACAGCGCAAAGGAGTTCATCCACTCTGAGCTGCTGGCGTTCCTGTACTCGAGCGCGGATCAGAACGTGCTGATGGAGGAGTGTGCTGATCAGGCTCAGCACCGAGAAGAAGTGTTGAGGATGTACCACGCCCTTAAGGAGGCCCTCAGCATCATCAGTGACATCAGCACCACCACTATCTCCATCCCCCTGCCCCCACCTGTGGATGACACCTGGATCAACGTGGAGCccggTCCTCCTGCTCAGGTGAAGCCTCCAAGCTCCGCCCCTCCTCCTGGTCGTCCTCCTGCAGTGAGAGGTCCCACCCCTGGTCCTCCTCCAGGCTCCGTTCCTCCACCAATGGCTCCACCAATTCCATCTCGGCCCGGTCCTCCACCTGTGAATGCTTATGGGGGAGTGGCTCTGGAGCCAAGCTCCGCCCCTCCACCACAGATTCCCTCTCGACCTGCCCGAGTGCCCCCTTCCATACCACCTGGAATCCCCAGAAGACCTCCAGCAGCTCCAAACAGGCCAACCATCATCCGCCCGTCTGAGCCGTCCCTGCtcgactaaacacacacatacacatacagtacatacagagATAAAACAACATGGCGTGTGTGTACACGCGTACTGATACGGCTATCCATCCCTCATTTGTCATTCTAGtagaaacacagaaaacactcaGTCACATGTTCGTAAAGTTAATTGAGTTGTATTGGTTGTATGTCCATAGAGGCAACGTTATTACTCtgtatgtttcattttcttattataACAAAGCAGTTAGCTATTTCAGGAATAACCCACACACCAGCGATGCTAGCTATCTAATGCTAATTCTGTGGTGGACAACACCAACTAGGATTGATTCGAGGAATTTAATTTACGTAAAATTAAGAAAAACTCAACCAGGTCAGTTGACTAAAGGTTTCGATATTTCGTATATTTGACTTAAGCACATTTTAATAGTCGTATTACAGCTACAGGGTTCAAAACAGTCATATCTGATACTCAATAAGAACTCTGTATTCAAAAacgtctttgttttttttacgttcgttatagttgtttttttcttttttaatccatttattcaaATCGTTTCGTGAACACCAGACAGCATAGTGTATCTGTTTCCTAATGTGCGTTAAAGAAAATGAACGTTTACAGATAGAATGTTAACTCTAATTAGCAGAAAAAGGTGCTAGGTTTCATCTTATAAGGTTTGTGCTAATAATCAGTTGTACGATATTTGCTAATATAATACACCTTGCTAATCGCTAACATACTAACACTAATTAGGGACCCAAACTGGAAAGTGTTTTGCTTTAAACCGTGCCTTAAATATGACACTCCCTTATGTACAAGCGTCTTTTATACAGATTTAAATCTTCACTTCTGATGTGTTTGTACGTATTTATATATGCACTTTGATGCGCATCGTACGCTCTAATAACTATGCTGGGAGAAAAAACTTTAAGGTTGGATTAATTTCCTGCTAAAAGCTGCAAGTAAATGCGTCAAGGagattataatttaattaattacaaaattagTTTATAATAGAATCTGTTTCACGAGTGCAATATGATACAGCTACGAAACCTAATTTATATCTTTACCTGTTCATGCTACGAATTTTCAAGCTACATTTATGAATCACAATACCAGAGCGCATGATTACAATTTTGAGGGGTGGGGCCAGTGAGAAAGAAGTGGGCGGGGCCAAGTGCGTGAATAACTGCAAAGAGCTTAGAAAAGTTTCTACGAGTCGTGACTACAAATTGTAACATAAAACGATGACGTGTGTGTGACGTGAATGTGAGTATCGATTCATCAGCGTCGCATCCGATCTGCGTAAACACGttgcagatttacaaaagtGATTCGATTCGATTTAATTGTGATTCGTTAAAGTACCATTTGGTCGCCGCAGATGCAATTACAGGAACTCGGCTTTATATGTGACGCTGAATTTCAGCATCATGATCGTGCAAATATTTGTTAGCTAACACACTAACGCACCAGCCATGTGCTAACATTagataattagctagctaccttCATCACTACATGAGCGAAGTGTGCATGTAACTTGCTGCCTAGCGTTAGTtagatagttagctagctttgttCTTTGTGATAAGACCCTAGCAGTGTTATTGTCGtgattataaaattgaaataacaCAGAAAAGTCCGCTACGCCGACACTCTGTGCGTGATTTTTAACTCGCATTTAACTGCCGTGCGTTTTTAAGCCAAGTAATTTTATCGCTTTGGATGGGATATTAGATTAGCGATGGGGTTCGGAGCGTTAAAAATGGATATTACTTTACTTCATTACTCCACCTTAATTTTCTTATATATAGTTCAATAGTTATATAAATTCTATATAGTTTCATTTTGCCATATTCTTGtgtatgcattttattattattagtttttttttttttttaatttttcagccTGAACACATCCTGTggctggtttttatttttaaatcttttttttttcattcttttttttatgaatattttgtaCTTTGACCATCTGTGCCTTGTTCTGACGTTATAAGTGCCTGCTTTATAATAATGTTCCTCAATGATGCTgataaatgcaataataaaaaaaggaggCAATgggaaattaataaaaaagggAATTTAACTCA

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0061061 muscle structure development biological_process
GO:0060026 convergent extension biological_process
GO:0009790 embryo development biological_process
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447431 lncRNA upstream 3590 17574761 ~ 17585043 (+) True G377644
TU447429 lncRNA upstream 19166 17569060 ~ 17569467 (+) False LOC113526395
TU447424 lncRNA upstream 19663 17566806 ~ 17568970 (+) False LOC113526395
TU447382 lncRNA upstream 160777 17415404 ~ 17427856 (+) True G377604
TU447343 lncRNA upstream 271662 17316560 ~ 17316971 (+) True G377569
XR_004577311.1 lncRNA downstream 88794 17701668 ~ 17702743 (+) True LOC117596150
TU447503 lncRNA downstream 201657 17814531 ~ 17815106 (+) True G377703
TU447520 lncRNA downstream 272164 17885038 ~ 17887303 (+) True G377709
TU447530 lncRNA downstream 325393 17938267 ~ 17942279 (+) True G377715
TU447552 lncRNA downstream 344372 17957246 ~ 17957480 (+) True G377723
XM_034299907.1 mRNA upstream 19401 17561445 ~ 17569232 (+) True LOC113526395
XM_026913797.2 mRNA upstream 30580 17552000 ~ 17558053 (+) True tmed1b
XM_026913524.2 mRNA upstream 63206 17513585 ~ 17525427 (+) False LOC113526467
XM_026913523.2 mRNA upstream 63206 17521262 ~ 17525427 (+) True LOC113526467
XM_034300098.1 mRNA upstream 93822 17451592 ~ 17494811 (+) False LOC113526593
XM_034299908.1 mRNA downstream 44804 17657678 ~ 17684129 (+) True LOC113525128
XM_026911584.2 mRNA downstream 100497 17713371 ~ 17723802 (+) True pin1
XM_026911582.2 mRNA downstream 113059 17725933 ~ 17728564 (+) True LOC113525124
XM_034300132.1 mRNA downstream 125241 17738115 ~ 17740854 (+) True LOC117596147
XM_034300129.1 mRNA downstream 125467 17738341 ~ 17757199 (+) False LOC117596144
XR_004577315.1 other upstream 733617 16822550 ~ 16855016 (+) False b3gntl1
TU446960 other upstream 1024117 16561383 ~ 16564516 (+) True G377269
TU446758 other upstream 1244009 16340768 ~ 16344624 (+) False G377132
XR_004577301.1 other upstream 1272248 16290730 ~ 16316385 (+) False LOC113537689
TU447578 other downstream 442750 18055624 ~ 18056805 (+) True G377747
TU447579 other downstream 449544 18062418 ~ 18068946 (+) True G377748
TU447580 other downstream 449544 18062418 ~ 18068946 (+) False G377748
TU447581 other downstream 449544 18062418 ~ 18068946 (+) False G377748
trnak-uuu_20 other downstream 506791 18119665 ~ 18119737 (+) True trnak-uuu_20

Expression Profile