RNA id: XM_034300131.1


Basic Information

Item Value
RNA id XM_034300131.1
length 1452
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC117596146
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17764286 ~ 17773365 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAAAAGTATGGGAGGATGAACATCTGCaaaagagatgagaagagattAGAGAGAAGCACCTAAGGTGTCTAGGGTCAAACCCACAATCTCTGCTTTAGAATCGAGGCATCGTTTTCTTGAAAAAGTTAAAGGAGACTAAAATGATTGGCAtggtgtgttcagtgttttcagtgttgtgtgttctcCCCCTGCTGGTTGGGAGCACTCCTATTTCTCAAGATCTGTTTCCGACTGACTGCTCTGATGTCTACGCTAACGGACAAACGCTCAGTGGCGTGTACACCATCTACCCTACAGCAGACACACCTGTACAGGTGTACTGTGACATGGGATGTGGGGAAAGCCAAACAGAAGACGGGAAGTGGACGGTGtttcagaggagaatggacgGCACTGTGAATTTCTACAGACCATGGGAACACTATAAGAAAGGGTTTGGAAACAAGCATGGAGAATACTGGCTAGGATTAGAACACATCTACCAGCTCACACATAAGAGGAAATACGAGCTGAAAGTGGACCTGCAGGACTTCGCCGGGGTGTCGGTTTATGCTCGATATTCTTCTTTCTCTATAGATTCTGAAGCTGACGGCTACACACTCCACATTAGTGGTTTCATCAATGGAGGTGCAGGTGATTCTCTGGCTACAAACAACGGACAGAAATTCTCCACCTTTGATAAAGACCAGGACTCGTATGCAGGGGGAAACTGTGCTAAATCCTACCTCGGGGCTTTTTGGTACAGTCAGTGCCACCATGCGAACCCTAACGGGATATACCTGTGGGGACAGGACGGCACTCATTACGCCATCGGAAATGTGTGGTACCATTGGAAAGCCTATGATTATGGTCTCAAATACATCACCATGAAGATCAGACCTGTGTCTGTAGCATAGTGATGAATTTCTCTTTATAACAttcttgttgttgatgatggtggaggtggacatggtggtggtgttggaggaGGTGGTGTTGAAGTGGAGGTGGAAGTGTTGGTGttggaggtgatggtggtggtgttggtggtggtttctgtctctctctctctctcacacccacatgcacacacacacacacacacacacacacatcccagaAACAGaagacaataacacacaccaaaGAGGAGGCCCTGCAGCACATCCACATTGAGTtcatatgctcactacatagggtatagcATAATCTGTAGTGCACCAGATATCCAACAGAATGGCAATTGAGCCACAACCACAGAAAAGAAATtacttcaataaaaaaatattttttaagtcgagattttaaaacactgatccacaattacaaaatgtaaacaacatTTCTTGATCCCGGTCTCTTTTCCTGTACTGAGACGTTTAGCCAGAAGATAAGGGTTTCAAGAAACCCAAGAAATGGGTTTCAATCAACTTTcgttttgcatttaaaaataaaacacaagatcTTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577311.1 lncRNA upstream 61543 17701668 ~ 17702743 (+) True LOC117596150
TU447439 lncRNA upstream 164352 17595088 ~ 17599934 (+) True G377652
TU447431 lncRNA upstream 179243 17574761 ~ 17585043 (+) True G377644
TU447429 lncRNA upstream 194819 17569060 ~ 17569467 (+) False LOC113526395
TU447424 lncRNA upstream 195316 17566806 ~ 17568970 (+) False LOC113526395
TU447503 lncRNA downstream 41166 17814531 ~ 17815106 (+) True G377703
TU447520 lncRNA downstream 111673 17885038 ~ 17887303 (+) True G377709
TU447530 lncRNA downstream 164902 17938267 ~ 17942279 (+) True G377715
TU447552 lncRNA downstream 183881 17957246 ~ 17957480 (+) True G377723
TU447558 lncRNA downstream 193853 17967218 ~ 17968950 (+) True G377727
XM_034300129.1 mRNA upstream 7087 17738341 ~ 17757199 (+) False LOC117596144
XM_034300128.1 mRNA upstream 7087 17753424 ~ 17757199 (+) True LOC117596144
XM_034300134.1 mRNA upstream 13125 17746332 ~ 17751161 (+) True LOC113525113
XM_034300132.1 mRNA upstream 23432 17738115 ~ 17740854 (+) True LOC117596147
XM_026911582.2 mRNA upstream 35722 17725933 ~ 17728564 (+) True LOC113525124
XM_034300130.1 mRNA downstream 3487 17776852 ~ 17780086 (+) True LOC117596145
XM_034300133.1 mRNA downstream 16158 17789523 ~ 17794659 (+) True LOC113525123
XM_034300120.1 mRNA downstream 28252 17801617 ~ 17805521 (+) True LOC117596140
XM_034300122.1 mRNA downstream 36267 17809632 ~ 17813297 (+) True LOC117596141
XM_026911300.2 mRNA downstream 76102 17849467 ~ 17869038 (+) True LOC113524912
XR_004577315.1 other upstream 909270 16822550 ~ 16855016 (+) False b3gntl1
TU446960 other upstream 1199770 16561383 ~ 16564516 (+) True G377269
TU446758 other upstream 1419662 16340768 ~ 16344624 (+) False G377132
XR_004577301.1 other upstream 1447901 16290730 ~ 16316385 (+) False LOC113537689
TU447578 other downstream 282259 18055624 ~ 18056805 (+) True G377747
TU447579 other downstream 289053 18062418 ~ 18068946 (+) True G377748
TU447580 other downstream 289053 18062418 ~ 18068946 (+) False G377748
TU447581 other downstream 289053 18062418 ~ 18068946 (+) False G377748
trnak-uuu_20 other downstream 346300 18119665 ~ 18119737 (+) True trnak-uuu_20

Expression Profile