RNA id: XM_034300132.1


Basic Information

Item Value
RNA id XM_034300132.1
length 1351
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC117596147
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17738115 ~ 17740854 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGAGAAGCATCTAAGGTGTCTAGGGTCAAACCCACAATCTCTGCTTTAGAATCGAGGCATCGTTTTCTTGAAAAAGTTAAAGGAGACTAAAATGATTGGCATGGTGTTTTCAGTGCTttcagtgttgtgtgttctcCCCCTGCTGGTTGGGAGTACTCCTATTTCTCAGAATCTGTTTCCGACTGACTGCTCTGATGTCTACGCTAACGGACAAAGACTCAGTGGCGTGTACACCATCTACCCTACAGCAGACACACCTGTACAGGTGTACTGTGACATGGAATGTGGGGAAAGCAAAACAGAAGACGGGAAGTGGACGGTGtttcagaggagaatggacgGCACTGTGAATTTCTACAGACCATGGGAACACTATAAGAAAGGGTTTGGAAACAAGTATGGAGAATACTGGCTAGGATTAGAACACATCTACCAGCTCACACATAAGAAGAAATACGAGCTGAAAGTGGACCTGCAGGACTTCGCCGGGGTGTCGGTTTATGCTCGATATTCTTCTTTCTCTATAGATTCTGAAGCTGACGGCTACAAACTCCACATTAGTGGTTTCACCAATGGAGGTGCAGGTGATTCTCTGGCTACACACAACGGACAGAAATTCTCCACCTTTGATAAAGACCAGGACTCGTATGCAGGGGGAAACTGTGCGAAAAGCTACCTTGGGGCTTTTTGGTACGGTCAGTGCCACCATGCGAACCCTAACGGGATATACCTGTGGGGAAAGGACGGCACTCATTACGCCATCGGAAATGTGTGGTACCATTGGAAAGCCTATGATTATGGTCTCAAATACATCACCATGAAGATCAGACCTGTGTCTGTAGCATAGTGATGAATTTCTCTTTATAACATTCTTGTGGttgatgatggtggaggtggacatggtggtggtgttggaggaGGTGGTGTTGAAGTAGAGGTGGAAGTGTTGGTGTTGGAGGTgatggtggtagtggtggtggtggtttctgtctctctctctctctctctctctctcacacaccaaaGAGGAGGCCCTGCAGCACATCCACATTGAGTtcatatgctcactacatagggtgtagcATAATCTGTAGTGCACCAGATATCCAACAGAATGGCAACTGAGCCACAACCACAGAAAAGAAATTActtcaataaaaaatattttttaagtcgagattttaaaacactgatccacaattacaaaatgtaaacaacatTTCTTGATCCCGGTCTCTTTTCCTGTACTGAGACGTTTAGCCAGAAGATAAGGGTTTCAAGAAACCCAAGAAATGGGTTTCAATCAACTTTcgttttgcatttaaaaataaaacacaagatcTTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577311.1 lncRNA upstream 35372 17701668 ~ 17702743 (+) True LOC117596150
TU447439 lncRNA upstream 138181 17595088 ~ 17599934 (+) True G377652
TU447431 lncRNA upstream 153072 17574761 ~ 17585043 (+) True G377644
TU447429 lncRNA upstream 168648 17569060 ~ 17569467 (+) False LOC113526395
TU447424 lncRNA upstream 169145 17566806 ~ 17568970 (+) False LOC113526395
TU447503 lncRNA downstream 73677 17814531 ~ 17815106 (+) True G377703
TU447520 lncRNA downstream 144184 17885038 ~ 17887303 (+) True G377709
TU447530 lncRNA downstream 197413 17938267 ~ 17942279 (+) True G377715
TU447552 lncRNA downstream 216392 17957246 ~ 17957480 (+) True G377723
TU447558 lncRNA downstream 226364 17967218 ~ 17968950 (+) True G377727
XM_026911582.2 mRNA upstream 9551 17725933 ~ 17728564 (+) True LOC113525124
XM_026911584.2 mRNA upstream 14313 17713371 ~ 17723802 (+) True pin1
XM_034299908.1 mRNA upstream 53986 17657678 ~ 17684129 (+) True LOC113525128
XM_034300103.1 mRNA upstream 125241 17588633 ~ 17612874 (+) True dnm2b
XM_034300104.1 mRNA upstream 125241 17588633 ~ 17612874 (+) False dnm2b
XM_034300134.1 mRNA downstream 5478 17746332 ~ 17751161 (+) True LOC113525113
XM_034300128.1 mRNA downstream 12570 17753424 ~ 17757199 (+) True LOC117596144
XM_034300131.1 mRNA downstream 23432 17764286 ~ 17773365 (+) True LOC117596146
XM_034300130.1 mRNA downstream 35998 17776852 ~ 17780086 (+) True LOC117596145
XM_034300133.1 mRNA downstream 48669 17789523 ~ 17794659 (+) True LOC113525123
XR_004577315.1 other upstream 883099 16822550 ~ 16855016 (+) False b3gntl1
TU446960 other upstream 1173599 16561383 ~ 16564516 (+) True G377269
TU446758 other upstream 1393491 16340768 ~ 16344624 (+) False G377132
XR_004577301.1 other upstream 1421730 16290730 ~ 16316385 (+) False LOC113537689
TU447578 other downstream 314770 18055624 ~ 18056805 (+) True G377747
TU447579 other downstream 321564 18062418 ~ 18068946 (+) True G377748
TU447580 other downstream 321564 18062418 ~ 18068946 (+) False G377748
TU447581 other downstream 321564 18062418 ~ 18068946 (+) False G377748
trnak-uuu_20 other downstream 378811 18119665 ~ 18119737 (+) True trnak-uuu_20

Expression Profile