RNA id: XM_034300134.1


Basic Information

Item Value
RNA id XM_034300134.1
length 1104
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC113525113
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17746332 ~ 17751161 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTTCTGGACTCTCCTGCTCCCCCTGCTGGTTGAGAGTACTCCTTTTTCTCCGGAACTGTTCCCGACTGACTGCTCTGATGTCTACGCTAATGGACAAACACTCAGTGAAGTGTACACAATCTACCCTACAGGGGAAACACCTGTACAGGTGTATTGTGACATGGGCTGCTGGGAAAGCCGAACAGAGGATGGGAGTTGGACGGTGtttcagaggagaatggatgGCAGTGTGAATTTCTACAGACCATGGGAACACTACAAGAAAGGATTTGGGAACAAGGATGGAGAATACTGGCTAGGATTGGAGAATCTTTACCAACTCACACGTAGGAGGAAGTATGAGCTGAGAGTGGACCTGCAGGACTTTGATGGATCATCAGTTTATGCTCACTATTCCTATTTCTCTGTGGATTCTGAAGCTGAGGGCTACAGGCTCCACGTTAGAGGTTTCATCAATGGAGGTgcagGTGACTCTCTGGCCATACACAATGGACAGAAATTCACCACCTTGGACAGAGACCAGGACTTGTATGCACCAAAAAACTGTGCTAAACTCTTCCTTGGGGCTTTTTGGTACAACCAGTGCCACTATGCTAACCCTAATGGGATATACCTGAGGGGAAATGATGACACCCATTTTGCTATTGGAAATGTGTGGTACACTTGGAAAGACTATAATAATGGTCTTAAGTCCATCACTATGAAAATCAGACCTGTGATATAATGAGTCTTTATCACTGAAAAGCTATGATGTTCTCAAGTACATTACTAAGAAGATCAGATCTGAGTCTTCTGAGGCCTATGTGACTTTTTCTTGACATCACTTTTTGTATTTTGGTGTTTACTTTGATTttaaagatataataataatttagaatttaaattaaatttaactatttaataataatattttaaagggTTGTAATAATGTCTGTAAAGTATATTGCTGCAGTATTTGAGGTCTATATACATTTCTTCCAGTGTactgatgtaaaaatgaaatttatgaGCTGTAAATGAACAGAATAGTAGTTTCTAAGACCTtgtgaaattgaaaaaaaatactgcaaatgacatcaaaataaaaaaataaataaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577311.1 lncRNA upstream 43589 17701668 ~ 17702743 (+) True LOC117596150
TU447439 lncRNA upstream 146398 17595088 ~ 17599934 (+) True G377652
TU447431 lncRNA upstream 161289 17574761 ~ 17585043 (+) True G377644
TU447429 lncRNA upstream 176865 17569060 ~ 17569467 (+) False LOC113526395
TU447424 lncRNA upstream 177362 17566806 ~ 17568970 (+) False LOC113526395
TU447503 lncRNA downstream 63370 17814531 ~ 17815106 (+) True G377703
TU447520 lncRNA downstream 133877 17885038 ~ 17887303 (+) True G377709
TU447530 lncRNA downstream 187106 17938267 ~ 17942279 (+) True G377715
TU447552 lncRNA downstream 206085 17957246 ~ 17957480 (+) True G377723
TU447558 lncRNA downstream 216057 17967218 ~ 17968950 (+) True G377727
XM_034300132.1 mRNA upstream 5478 17738115 ~ 17740854 (+) True LOC117596147
XM_026911582.2 mRNA upstream 17768 17725933 ~ 17728564 (+) True LOC113525124
XM_026911584.2 mRNA upstream 22530 17713371 ~ 17723802 (+) True pin1
XM_034299908.1 mRNA upstream 62203 17657678 ~ 17684129 (+) True LOC113525128
XM_034300103.1 mRNA upstream 133458 17588633 ~ 17612874 (+) True dnm2b
XM_034300128.1 mRNA downstream 2263 17753424 ~ 17757199 (+) True LOC117596144
XM_034300131.1 mRNA downstream 13125 17764286 ~ 17773365 (+) True LOC117596146
XM_034300130.1 mRNA downstream 25691 17776852 ~ 17780086 (+) True LOC117596145
XM_034300133.1 mRNA downstream 38362 17789523 ~ 17794659 (+) True LOC113525123
XM_034300120.1 mRNA downstream 50456 17801617 ~ 17805521 (+) True LOC117596140
XR_004577315.1 other upstream 891316 16822550 ~ 16855016 (+) False b3gntl1
TU446960 other upstream 1181816 16561383 ~ 16564516 (+) True G377269
TU446758 other upstream 1401708 16340768 ~ 16344624 (+) False G377132
XR_004577301.1 other upstream 1429947 16290730 ~ 16316385 (+) False LOC113537689
TU447578 other downstream 304463 18055624 ~ 18056805 (+) True G377747
TU447579 other downstream 311257 18062418 ~ 18068946 (+) True G377748
TU447580 other downstream 311257 18062418 ~ 18068946 (+) False G377748
TU447581 other downstream 311257 18062418 ~ 18068946 (+) False G377748
trnak-uuu_20 other downstream 368504 18119665 ~ 18119737 (+) True trnak-uuu_20

Expression Profile