RNA id: XM_034300211.1


Basic Information

Item Value
RNA id XM_034300211.1
length 2809
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC113537512
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15482534 ~ 15494984 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGCTCGGGTTTCCTGCTTTCCCTTCAACAGCTTCTGGACTCTGGAATATTTTTCTCTTCGTGTGCGCTGCGTTCGATTTCTGTGAACGAATCTCCAGTTCATTTTGATTTCTTgacttcattttaaatgtaaggtTGTACTTTATGACTGAATATGAATCAGTGACTGCTGGCTgattagttcttttttttagctgaaatagttacagagggaggaagaagaagagaggaggaggaggaggaggaggaggaaggtgGAGGAGGAAGGTGGAGGAGGTGAAGCACCTGTCCCATGCGCATTGGACGGAGCTGAGCAGCTCAGGGTTAAAGGTCTTTTGGGAGGCGCCGTGGCGACGTTGGACGTTGGGACATTAATAATGTCCCGGTGGATTATCTGAGCGGAAAGGCGGTGGAGACGGAGGTGGAggtgatgacgatgatgatgatgatgatgaaggctGACAGTGTGcagaaggagatggaggagaggaaTCTGCGCCCCCGCCTGTGCTACCTGACCAAAGGCGAGCGCGGTTACGGCTTCCACCTGCACGGAGAGCGCAGCAGCGGCGCGCAGTTCATCCGCAGGATCGAGGCGGGGTCTCCTGCAGAGCTGGCAGGACTTCGCTCCGGGGACCGCGTGGTGGAGGTGAACGGAGAAAACGTGGAGAAGGACTCACACCAGCAGGTGGTTCAGAAGATCATGGAGGTGGAGAACAGGACAAGGCTCTTGGTGGTGGATCGAGAGACGGACGAGTTTCTGCTCCTCCACTCTCTGCCCTGCACCGAGGACCTGGCCGTGGAGATGAGCTGCCTCCTCTCCCCTCGcacctcctcctcttccctcGCTTCAGCCACCCTGAGCTTCTCCTCATTGTCCCGTGAATCCCTCACTCCATCGCCACAAGACTCCATCATTTTATCACCGCGAgacttcactcattcactctctgaCTCCATTACACCGTCACTGCTGCCCAAATCCACCACTTCATCACCACCTGACTCCATTGCTCCGTTACCCGGTGACTCCATTATTCCATCACCACAAAATTCCACTCCACTCTCACCAGGCAAATCTGTCACTCCATCACCAGAAGACTCCATCACTCAGTCATCACGCAACTCCATTAATCAATCACCATGTGACTCTGTCACACCATCACTGTCCAACTCCGTTAATCAATCACCCTATGACTCCATTACTCAATCACCATCCAACTCCATTACTCAATCAGCATCCAACTCCATTACTCAATCACCATCCAAATCCATTACTCAATCACCATCCAACTCCATTACTCAATCACCATCCAAATCCATTACTCAATCACCATCCAACTCCAATACTCAATCACCCCAACTCCATTACTCAATCACCATCCAACTCCAATACTCAATCAGCATCCAACTCCATTACTCAATCACCATCCAACTCCATTACTCAATCACCATCCAATTCCATTACTCAATCACCCTAACTCTATTACTCAATCACCATCCAACTCCATTACTCAATCACCATCCAACTCCATTACTCAATCACCATCCAAATCCATTACTCAATCACCCTATGACTCCATTACTCAATCACCATCCAACTCCATTACTCAATCACCATCCAAATCCATTACTCAATCAGCATCCAAATCCATTACTCAATCAGCATCCAAATCCATTACTCAATCACCATCCAACTCCATTACTCAATCAGCATCCAACTCCATTACTCAATCACCATCCAACTCCATTACTCAATCACCATCCAAATCCAACTCAATCACCATCCAAATCCAATACTCAATCACCCTATGACTCTATTATTCAATTACCATCCAACTCCATGACTCAATCACCATCCAACTCCATTACTACTTCTTTCATAAGGGAAAAATCAGACGAGACCAATGTAAAGGACATCATCGTCACCACCGACAACAAGgagATGTCAGGAACAGAGGACATGAAGGCGCGTGACCTGAGGCCGCGGCTGTGTCACATAGTGAAGGATAAGCAGGGTTTCGGCTTTAACCTGCACTGTGATAAGCGGCGTGTGGGTCAGTTCATCCGCTCGGTCGACCCTGATTCACCCGCGCAGAGAGCTGGACTACAGCCCGGAGACAGGCTCATCCAGgtgaacGGCAGAAGCATTGAGGGTCTGAGGCACTCGGAGGTGGTGGAGATAATCCGAAGTGGAAGAGGACAGACCAAGCTGTTGGTGGTGGATCCGGAAACGGATGCTCTGTTTCAGAAACTCGGCATCACACCGACTACAGCGCACCTTAATGAGGACTGTGTGGACGGTCCACTCATAGAGAGTCCAACCTCAACCTGTCCAATCACAGACAGCTCTGGGTCTCCTTCCAAAACCCCCAACGGCTCGCTGAACCAACTGCCAATCACAAACCTCACTGTGACGGATCCACCAACCAGAAACGGCTCTCTGAAGCACCAGAGTCGCggaagctcctcctcctccaggtCCATCACTTCAGAGATGAGTGTGGAgctgagcagctctgacaccagcaacaatGTGTTGGAGTCAGAGCAGCGTAAGTGTAACAGCGCCCCCGGAGTGCAGGAGGGAAAGGCGGTGAAGGATTTGGACCCGCTGTGGGCGAGCGGCCTGCACCTGAGCCCCACGGCGGCCGAGGCCAGGCAGAAGGTCAGGCTGAAGAAGGCTAACAAGAGAGCGCCCCCTATGGCCTGGAACAAGAAATACGAGATCTTCAGCAACTTCTGAGCTGTTCGGTCCAAAGAGATCTAACAGAACCTGGACCCTGGGACGAGGAAAAGGGAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446070 lncRNA downstream 19912 15461134 ~ 15462622 (-) True G376670
TU446085 lncRNA downstream 28742 15412424 ~ 15453792 (-) False dpy30
TU446084 lncRNA downstream 28742 15450312 ~ 15453792 (-) True dpy30
TU446071 lncRNA downstream 81264 15397668 ~ 15401270 (-) True G376671
XR_004577285.1 lncRNA downstream 323888 15158146 ~ 15158646 (-) True LOC117596121
TU446162 lncRNA upstream 53408 15548392 ~ 15549785 (-) True G376755
TU446167 lncRNA upstream 116638 15611622 ~ 15653021 (-) True G376758
TU446181 lncRNA upstream 179823 15674807 ~ 15679171 (-) True G376763
TU446210 lncRNA upstream 186177 15681161 ~ 15683090 (-) True G376786
TU446236 lncRNA upstream 221208 15716192 ~ 15716946 (-) True G376807
XM_034300210.1 mRNA downstream 26147 15453138 ~ 15456387 (-) False dpy30
XM_034300014.1 mRNA downstream 46274 15425244 ~ 15436260 (-) False srd5a2a
XM_026931808.2 mRNA downstream 46280 15425244 ~ 15436254 (-) True srd5a2a
XM_026932211.2 mRNA downstream 191172 15287451 ~ 15291362 (-) False btbd3a
XM_026932213.2 mRNA downstream 192847 15286110 ~ 15289687 (-) True btbd3a
XM_026931717.2 mRNA upstream 2955 15497939 ~ 15501527 (-) False nthl1
XM_026931716.2 mRNA upstream 2955 15497939 ~ 15501526 (-) True nthl1
XM_034300376.1 mRNA upstream 55942 15550926 ~ 15634446 (-) False pkd1a
XM_034300375.1 mRNA upstream 55942 15550926 ~ 15634446 (-) True pkd1a
XM_034300377.1 mRNA upstream 58332 15553316 ~ 15634447 (-) False pkd1a
TU446066 other downstream 24329 15455779 ~ 15458205 (-) False dpy30
TU446067 other downstream 25451 15455779 ~ 15457083 (-) False dpy30
TU446065 other downstream 25507 15455779 ~ 15457027 (-) False dpy30
TU445400 other downstream 770157 14697239 ~ 14712377 (-) False ifngr1
TU445430 other downstream 798206 14683102 ~ 14684328 (-) False G376143
TU446479 other upstream 422644 15917628 ~ 15920553 (-) True G376956
TU446429 other upstream 438653 15933637 ~ 15942686 (-) False khsrp
TU446671 other upstream 657935 16152919 ~ 16155481 (-) False zgc:158803
TU446672 other upstream 660624 16155608 ~ 16164370 (-) False zgc:158803
XR_004577334.1 other upstream 930470 16425454 ~ 16475431 (-) False LOC113537389

Expression Profile