RNA id: XM_034300231.1


Basic Information

Item Value
RNA id XM_034300231.1
length 1480
RNA type mRNA
GC content 0.45
exon number 5
gene id mrpl16
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5963752 ~ 5969065 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGTATTTTAATGCGTCACCGGATGTAGCCTAAGAAAGATGGCTGCGACCTTGTTGAATGCATGTTGACAAAACGGCAACCGTGTACCACTCAGAAGATGATATTAATGGTTTGATAAAATAGTTTGATATTTCTAACATTATAATTGAACATGTTTTCGGTGTTTAGGCGTGTGTTTTCAGGGCTAGCGAGCAGGACGCTACAAGCGCCAGCTCTCCTGCAGCAGCAGGACTTAAAGGTGCTCTCGGCTGGGTTGAAGACGTATGATGTTCCTCCAGACTACAGTGATGTGGTTTTACCAGACAGGCCCAAACTCAAATTCCTCAATAAGGTCCCTAATTTAAAAAAGGCCAAGAAGGAGATGAAGAAGCTACGTGACATCCAGGGTCCAGCTATTTCCGCCAACACGTTCAGATGGGGACAGTATGGCATTTTGGCTATGGGTGGAGGATATCTGCACTGGGGCCACATGGAGATGATGAGGCTCACTATTAATCGGCGTATGGACTCACGTACCACCTTTGCCCGTTGGCGGATTAATGCTCCTTACAAGCCCATTACTCGTAAAGGCCTGGGTCAACGCATGGGAGGAGGCAAAGGTGCCATCGACCACTACGTTACACCAGTAAAGTGCGGCCGGTTGATAGTAGAGGTCGGAGGTCATATTGAACTTGGGGAAGTGGAATCTGTGCTTAAAGAAGTGGCAAAGAAGCTGCCCTTCCCAGCCAAGGTGGTGAGCAGAGAGAGTCTGGCTGCCATGCAGCAGGAACAAGCTGAGATGGAGGCCAACAACCAGAACCCATGGACCTTCAAGAGAATAGCCAGGTCCAATATGCTGGGCATCCGCAAAGTCCTCAGCCCGTTTGATCTCCATAATCACGGCCGCTACACCGGAAAGTTCTTCAATCCAGACAGAGTCTGAGCTCGACTGGACCATGGCAGGCTGAAAAACGGCATCATCAATACCTCTtccaaaaaaatgtgcaaaaaacaGTGTATGAACTTTATCTACACACCACATCCTGTGTTAGATTAGGATCACACTCTTCAGCAGTGAAGTTGGCAGTGGATCAGAAGAATGAGAGAATTGTAGACCAACCATCATGctacactatgtgtgtgtgggtgtgtagtatttcagaatgttttatatattaaatcatACTTACATTGAGCCtcatttataaatcttttaGTATGAAAACGTTTGCGTAAGCCAAATTGAACTAAGAGTTTCCACTAGAGTTACTAAAgtttcagaaaatgctgattTCCCTTGTACTTATGTGCGTATATTAATCTCCCATAAAGTGCAAAGCatgttcctgacacagctcattttcATTTAGTGAAAACCACAAAGGTAATTGGTTAAGCACCTAGAGGGCTggaaacagtgaaagaaaaaagcagaaaggcaTATGTCAACGTTATTTCAACTcccttctatgccaataaaagaTATTTAGCACTGTCACA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02878 RP-L16, MRPL16, rplP; large subunit ribosomal protein L16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439651 lncRNA downstream 68064 5892326 ~ 5895688 (-) True G371121
XR_004577356.1 lncRNA downstream 71955 5886846 ~ 5891797 (-) True LOC117596178
TU439645 lncRNA downstream 78140 5880476 ~ 5885612 (-) True G371117
XR_004577342.1 lncRNA downstream 445372 5510716 ~ 5518380 (-) True LOC117596170
TU439411 lncRNA downstream 455383 5508102 ~ 5508369 (-) True G370942
TU439680 lncRNA upstream 24424 5993489 ~ 5994747 (-) True G371147
TU439686 lncRNA upstream 28938 5998003 ~ 5998159 (-) True G371152
TU439687 lncRNA upstream 29783 5998848 ~ 5999474 (-) True G371153
TU439665 lncRNA upstream 32114 6001179 ~ 6001613 (-) True G371135
TU439664 lncRNA upstream 32773 6001838 ~ 6004790 (-) True G371134
XM_026932220.2 mRNA downstream 11439 5942039 ~ 5952313 (-) False LOC113537623
XM_034300324.1 mRNA downstream 11639 5942039 ~ 5952113 (-) True LOC113537623
XM_026931713.2 mRNA downstream 43553 5913959 ~ 5920199 (-) True mrpl39
XM_026931654.2 mRNA downstream 54885 5896336 ~ 5908867 (-) False jam2a
XM_026931653.2 mRNA downstream 54885 5896336 ~ 5908867 (-) True jam2a
XM_026932062.2 mRNA upstream 1975 5971040 ~ 5973439 (-) True txnl4b
XM_026931773.2 mRNA upstream 7312 5976377 ~ 5983797 (-) True blzf1
XM_034300228.1 mRNA upstream 7312 5976377 ~ 5983574 (-) False blzf1
XM_026932021.2 mRNA upstream 46661 6015726 ~ 6033393 (-) True tpp2
XM_026932022.2 mRNA upstream 46661 6015726 ~ 6033392 (-) False tpp2
XR_003403780.2 other downstream 11439 5942429 ~ 5952313 (-) False LOC113537623
XR_003403738.2 other downstream 416720 5534415 ~ 5547032 (-) False LOC113537235
XR_004577328.1 other upstream 50622 6019687 ~ 6033393 (-) False tpp2
XR_004577329.1 other upstream 389574 6358639 ~ 6363203 (-) False LOC113537742
XR_004577289.1 other upstream 1089770 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 1089770 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 1749198 7718263 ~ 7724795 (-) True G372086

Expression Profile