RNA id: XM_034300234.1


Basic Information

Item Value
RNA id XM_034300234.1
length 5222
RNA type mRNA
GC content 0.43
exon number 41
gene id LOC113537389
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16421261 ~ 16475431 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGTTGTTTCCAAACAGTTGGAGGGCTGCGTCTtgctaacacacactttctcagaCTGAGCCAGGACCAGCAGGCAGGATGCATGTAGACGTGGTGTGGCTGACAGCTACGTTTCTCTCCTTCCCCCTGCTCACACTATGTGACCCACTGTACATCATGTCAGCTCCCCAGATCCTGCGAGTGGGAACAGAAGAGCAGGTGTTTGTGGAGGTACAAGACTACCAGGGCACAGACCCTTTAGATGTCCATATCACAGTAATGAACTTCCCTAGTAAACACACAGACCTTGGCAATAATCGTGTCACACTAGAGCCAAACAACAACTATCAAGCTCTTGTTCCTATAAAGATTTCCTTAAATGATCAAGTTTTTAATGTGGACTCCGAGGAACAGCAGTATGTTTATCTGAAAGCAACTTGGAATAACGTTTTCCTGGAGAAAATTGTTATGGTCTCATTTCAGTCAGGGTATTTGTTTATTCAGACTGATAAGACAATATATACTCCAGATTCTACTGtaaaatacagaatatttgCTGTGAACTCTAAAATAAATCCTGTGGAAAATACTGTGATTGTGAAAATAGTGACTCCAGAAGGGATCACTGTTGAGCAAAAACAGCTTACTGTAAAAAAGGGAGTATTAAGTGATGAATTTAAACTGGGAAATCCCATCAGCAATGGATTCTGGAAAATAGCAGTAAACCTTAAGGAAAATCCTAATAAGAATTTCACAGCAGAGTTTGAAGTCAAAGAATACAGGCTGCCCAGTTTTGAAGTGAATCTCATACCTGAGAAATCTTTCTACTATGTTGATGATGAAAAGTTTTCTGTCAAAATCAAGGCAAAGTATCTGTTTGGCGAAACCGTCGAAGGTAGTGCTTTTGTTGTGTTTGGTGTGTTCAAAGGAGATGAAAAAATAAGCATACGGGGCTCCTTGAACAGGGTTGATATCACTAAAGGAGAAGGTACAGCAGAGCTAACCAGAGAACAGATCCTTCAAACCTTTCCAGACATACTTAAACTCATCGGGGAAACACTATACATATCTGTCAGTGTGCTTACTGACACTGGCAGTGAAATGGTGGAAGCTGAGAGGAGGGGTATTCATATAGTGACATCACCTTACACCATCCACTTCACCAGAACCCCCAATTATTTCAAACCTGGAATGCCTTTTAGCTTCATGGTGTATGTAGTGAACCCTGATGGGACACCAGCAAAACATGTTGAATTGGAGTTGACTTCTGAAAATGTCAGAGGACGGACTATGGAGAATGGCATGGCCATGTTCACCATAAACACCTTGCAAACACAGCGTGAGCTAAAGATCACAGTAAAGACAAATGATGAGAAACTTAACACCAGGAAGGAAAGCCAAGCGGTTAACACGTTGACAGTCCATGCCTATGCTTCTGCGTCTGGCTCCCAAAACTACCTGCACATTGGCTTACCTACTGAagagttgaagattggaaatcAGTTCTATGTCTCAATGAATATACATACTCCTACTGCACCTAATAACCACGATATTACTTATATGATCATAAGTAAAGGGCAGATTATGAGCACCTCAAAGCTGAAGAGAGTTGGTAGTCCTGTGATGAAAATAACTCTGACTGTCACCAAAGATATGCTTCCTTCATTTCGATTGGTGGCGTATTACCACCTAGGAGTCTCTGAGGTTGTTTCTGACTCCATCTGGGTTGACGTGAAGGACACATGCATTGGAACGCTTCAAGTGGAACTACATGATGCTAAACCAGTATATGCACCTgctgattcaattcaattaaaaattaCTGGGACTCCAAAGACAAATGTTTTTCTGGTAGCTGTGGATAAGGGTGTCTACATcctcaacaacaaaaacagactCACTCAGACCAAGATCTGGGACGTTATTGAGAAGCAAGACATTGGCTGTACAGCTGGCAGTGGTAAAGACAGTATGGGGGTTTTCTATGATGCAGGTCTGCTGTTCATATCAAATGCTGCAGAAAGCACTGCTGAGCGAAGAGACACCTCCTGCACACCTGATCCAAAAAGAAAGCGGCGTGCCATCACCAAATCACAAATCATAAACAAATTGGTAAGTGAGTATAATGACACACTGAAGCAGTGTTGCAGGGATGGAATGGTGGACAACTTTCTAGGTTACACCTGTGAGCGAAGATCCGAGTATATTGAGGATGGAGCTGAATGTCGCCAAGCCTTCCTGCATTGTTGCCAGAAACTTGCTGATTTAAGAAAAGAAGCTGTACAGGGGGAGCTGCACTTTGCCAGAAGTGAAGAATCAGAGGTAAATGAACTGTCTGATGACATTATATCACGCTCATACTTCCCTGAGAGCTGGATGTGGGATAAAGAAGAGATTTCCGAGTGTAAAGAAAAGGAGAATTGTGAAAAGATCACCTCTCATAACCTACCAGAATCCATCACCACCTGGGTGATCACTGCTGTCAGCATTTCAGCTGATTATGGTATTTGTGTGGCAGATCCATATGAGGTGATAGTTAAGAAGAACTTCTTTGTTGATCTGAAATTGCCTTACTCTGCAGTAGTCAACGAGCAAATAGAAATCAAAGCGGTTATCCATAACTTAGACAACACTAAACTGAAAAAGGTTTATGTGGAGTTGAAGGAGAATGAGGAGATATGTAGCATGGCCAGTTTTCAGCAAAAGTATCGCACAACTGTCAGCATTGATGCCAAATCGTCCCGTGCTGTCTCTTTTGTCATCATTCCTTTGAAGGCAGGACAATTTGAAATTGAGGTGAAGGCCTTGGACTTGGCATCACTAAGGACAGATGGTGTGCAGAAAAAGTTTACTGTAGTGACTCAGGGTGTTTTGACGTCTACAGGAGAGGTCACTTTACTATTAGAGCCTGAAAAGCATGGAGGACAGCAAAGATCAGAATTTAAGAGGCCATTCCTGAACAACCAAATGCCAGACACAGACGCTCACACATACATAGCTGTTAGAGGCAGGCCATTATCACAGTTTATTAATGAAGCCATCAGCGGTAAAGGTCTAGAAAGTCTCATTCAAGCGCCATCTGGCTGTGGAGAACAAAACCTGATGGCCATGGTCCTGCCTGTCCTCGCAACACATTACCTGGACAAAACCAAGAAGTGGAGTGATGTGGGGGTGGATAAACGCACCGAAGCTCTCAGGCACATCACTACAGGCTATGTGACGGAGCTCAACTATCTTACTGTAAATAATTCGTTTGCTGTTTGGAGCTATTCTAAAGGCAGCACATGGCTAACTGCGTATGTGGTGAAAATGTTCAGTCTGGCGAATGAATTGATCTACATAGAAAACCGTGTAATCTGTGATGCCATCAACTGGCTGATCACAAGCACACAGAATTCTGACGGCATGTTTTTTGAAGTGACATACATTTACTCCAGCTCTATGGGCGGCAAAAATTCCGGTCTGACCATGACGGCTTTTGTATTGATCGCGTTACAGGAGGGAAGCAAAATTTGTGATGTTCCTAATCTTTCATATCACATAAGGATGGCAGCAAGTTATATTACAAACAACATTGCTTCTGCAACTGACCCATATGCCGTGGCCATGGCATCCTGTGCTCTTGCAAATGCTGGCCAGTTGGATTCTGACCTTCTGTTCAAATTTGCTTCACCTGATCGGAGCCACTGGCCAGTGAGCGAAAGTCATTCTTTTACACTGGAGGCAACTGGCTATGCTCTCCTGGCACTTCTTGAGGCTCGTGATTTTGAGCGTGCCAAACCCATTGTAAGATGGCTGAAGACAAACCAAAGGTTTGACGGTGGATACCGCTCCACCCAGGCTACTGCTGTGGTGTTTGAGGCTATAGCTAGGTACGTGACTGAGAAACCTCCAACCAAGGAGGGATCTTTGACTGTCGTTGTCAGTTCTACCGCAAGAGGGACAGAGTTTAAAGGCTCATTCTCCAATAATGAAAAAAGTCTACAGCGCTCAGACAAGTTCATGGCAAATGGAGACCTAACAGTAAAAGCAACTGGGAAAGGTGAAGGCTCCATATCAATTGTCACCCTGTATTATACCAAACCTGGTGAAAATGATACAAAGTGTAAAAAGTTTGATCTGGAGgtaaaaatgatcagaaacagCACTGTTTCCTATCCACAAGCACTTGTGACTTACACGATTTTCATAGAGACCATgTTCCTGGATGAAACAAGAGAGGCTGCTATGACAATCCTTGATATCAGCATGCTGACAGGTTTTATAGCAGATACAACTGACCTGGAAAAGttgatgGGAAAAGACAGGTACATTCATAAGTTTGAGATAAACAAACAGCTTTCAGAGCGAGGATCCCTCATCATCTACCTCGAAAAAGGTACTCACAACagaAAAGAAAGAATTGCTTTCAGAGTTCATATGATGTTACACGTCGGTGTCCCTCAACCAGCGGCAGTAACTGTGTATGAATATTACAGCAAAGAGAACCAATGTGTGAAGTTTTATGACCCGCACATGGAGCAGTCCAGTGGCTCAATCCGCATCCTCTGCCCTAAAGAAGTGTGCAGCTGTGCTGAGGCAAACTGCCCTCGGCTGAAGAAGTCTCCGGTTCCAAAGGAAGCAGATCGCAGTAAAGAAGCCTGCCACAACAAGGACTTCATTTACCAGGCAACTCTGGAATTGGTGACAAGATCAGGCTCAACAGACAGCTACACTTTCACCATAATAAGAGTTATTAAAGAGGggactGATAGGAATGTGTTGAATGACGTTAGAGAATTTTATGCTCATATAGCCTGCAGAGACAAGCTTGGTTTGGAGGAAGGCAAGGACTACCTCATCATGGGCCCTGAGCCGAAACTGATTAGAGAAGAATACCGCTACACGCTTGGAACGAGCACTTGGTTGGAATACTGGCCCACGCAGGGGGAAAGTCAGGAGAACAAGGACAACAACAAGGAGAGATACATCGGCCTGCGCAGTCTGGCCAACCTGTTAGAGCAGTTTGGATGCACAACTTAAACTTCTTAACAACATGAACATGTGCATGAAGCTCGTATCACGGCTTAAACCACTGATTACCAGCTGCAACCTAACGACATCtgttttttcaaataataatgataataatattggGCTGCATCATTTTGATCACAGAAGAATGATGAAATATGGTGAAATATTAATAAGTAGACATCGATTTGagcatgatatatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446851 lncRNA downstream 30458 16389094 ~ 16390803 (-) True G377191
TU446816 lncRNA downstream 70802 16350249 ~ 16350459 (-) True G377172
TU446815 lncRNA downstream 71201 16349377 ~ 16350060 (-) True G377171
TU446750 lncRNA downstream 155614 16263903 ~ 16265647 (-) True G377125
TU446673 lncRNA downstream 199654 16216804 ~ 16221607 (-) False si:ch211-286b5.5
TU446915 lncRNA upstream 12359 16487790 ~ 16488131 (-) True G377244
TU447063 lncRNA upstream 103811 16579242 ~ 16581242 (-) False si:dkey-76b14.2
XR_004577292.1 lncRNA upstream 123482 16598913 ~ 16600222 (-) True LOC113547464
TU447074 lncRNA upstream 130899 16606330 ~ 16607547 (-) True G377359
TU447084 lncRNA upstream 145736 16621167 ~ 16741989 (-) False slc25a10
XM_034299953.1 mRNA downstream 3254 16413949 ~ 16418007 (-) True asf1bb
XM_026931886.2 mRNA downstream 9530 16398919 ~ 16411731 (-) True prkacab
XM_026931857.2 mRNA downstream 33054 16379306 ~ 16388207 (-) True samd1b
XM_026931919.2 mRNA downstream 48054 16368498 ~ 16373207 (-) True ndufb7
XM_026931890.2 mRNA downstream 72804 16341237 ~ 16348457 (-) True dnajb1b
XM_034300087.1 mRNA upstream 22354 16497785 ~ 16525406 (-) True LOC113537390
XM_034300088.1 mRNA upstream 58403 16533834 ~ 16559160 (-) True LOC117595682
XM_034300089.1 mRNA upstream 90822 16566253 ~ 16583137 (-) True si:dkey-76b14.2
XM_026931872.2 mRNA upstream 107948 16583379 ~ 16589630 (-) True zgc:65894
XM_026931861.2 mRNA upstream 155193 16630624 ~ 16663097 (-) False gcgrb
TU446672 other downstream 256891 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 265780 16152919 ~ 16155481 (-) False zgc:158803
TU446429 other downstream 478575 15933637 ~ 15942686 (-) False khsrp
TU446479 other downstream 500708 15917628 ~ 15920553 (-) True G376956
TU446067 other downstream 964178 15455779 ~ 15457083 (-) False dpy30
TU447143 other upstream 369581 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 369581 16845012 ~ 16845602 (-) False G377416
TU447682 other upstream 707301 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 790798 17266229 ~ 17268030 (-) True G377862
TU447860 other upstream 1232569 17708000 ~ 17712592 (-) False ubl5

Expression Profile