RNA id: XM_034300236.1


Basic Information

Item Value
RNA id XM_034300236.1
length 1563
RNA type mRNA
GC content 0.51
exon number 8
gene id cdc37
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18602567 ~ 18609984 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTCTGTTGTGACGTCGCTGCTAAACGGAAGCGCTGGAGTTTTCCAGAAAACGCTCCgagaaagaagaagagggaAGTTTTACTTCATAACGCGGATTAAATACGTTCTGGAGACACAGGGCGCAGTTTCAGTAGTGTTCTGGTGTTAGTGTATAGATAAAGCCTCTGACTGGACTTTATTATCTGATTTAAAACTGACATTAGGAGCAAAATAATGACCACCATCGACTACAGCGTGTGGGATCATATCGAGGTGTCTGACGATGAAGATGATACTCACCCCAATATCGACACACCCAGCCTGTTCCGGTGGAGACACCagGCTCGAGTGGAGCGAATGGAGGCTTTCCAGAAGAAAGGGGCAGAGCTAGAGAAGAGCCTATTAGAGGCCAAGAAGAAGCTGTTGGAGGCTCAGCGCAGGGTGCAGGAGCTGGAGCGGGCGAGTACGGACAAGGCCAAGAAGGAGCTAGAGGAGGCCAAGACCCAGGAGAAGCAGCTGCGCAAGGAGGAGAGGAGCTGTGAGAAGAAGTTGGAGGAGCACCgcagagaggagaagaagatgCCCTGGAATGTAGATACTCTCAGCAAGGAAGGATTTAGCAAAaGCGTGTTGAACGTAAAGCCGGAGGTGAAGGAGGAGACGGAGGACGAAAAGGAGCAGAAGCACAAGACCTTTGTGGAGAAGTATGAGAAACAGATAAAGCACTTTGgaatgCTGCGGCGTTGGGATGACAGTCAGAAGTACCTGTCTGATAACCCTCACCTGGTGTGTGAGGAGACGGCAAACTACCTGGTTATCATGTGCATCGAcctggaggtggaggagaaacaTGCTCTCATGGAGCAGGTGGCCCATCAGACCATCGTTATGCAGTTCATCCTGGAACTCGCTAAAAGCCTGAAGGTCGACCCCCGAGGCTGCTTCCGCCAGTTCTTCTCCAAGATCAAGacggCAGATCAGCAGTATCAGGATGCCTTTAATGATGAGCTGGAGTCGTTTAAGGAGCGCGTTCGTGGCCGGGCGAAGATCCGCATCGAGAAAGCCATGAAAGAgtatgaggaggaggagaagaaaaaacgCCTCGGACCTGGAGGTCTCGACCCTGTGGAGGTGTATGACGCCCTGCCTCcgGAAATGCAGAAGTGCTTTGATGAGAAAGACATCCAGATGTTACAGGATGCCATCAGCAAAATGGACCCAACGgaggcgAAGTACCACATGAAGCGCTGCATCGATTCGGGTCTGTGGGTGCCGAATTCACGGACAGGCGATgacggagagaaagaggaggagaaggaggaggagcctCAGTatgaggaactgaagacagGAGCTGCTCAGTGAGCCCCGCCCCCTTCAACACATCTCTCCCCTACTACcaattacccacaatcctctgGTCTGCCCTAAAAGCTTTAGAATTAATAAATGCAGAAGCTGTATGGAGTCGTATTTACTGGTGAGGACAcaattacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgatacAGCTGAAGATCCATGCTAGAAACAAACCACAAACATGAAGCc

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0019901 protein kinase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448142 lncRNA upstream 50695 18550863 ~ 18551872 (+) True G378166
TU448134 lncRNA upstream 66234 18535651 ~ 18536333 (+) True G378163
TU448110 lncRNA upstream 143101 18403834 ~ 18459466 (+) True G378151
TU448108 lncRNA upstream 197914 18403834 ~ 18404653 (+) False G378151
TU448107 lncRNA upstream 201318 18400593 ~ 18401249 (+) True G378150
TU448187 lncRNA downstream 19601 18628478 ~ 18631582 (+) True G378203
TU448190 lncRNA downstream 30324 18639201 ~ 18639825 (+) True G378206
TU448335 lncRNA downstream 100412 18709289 ~ 18709713 (+) True G378296
TU448350 lncRNA downstream 185218 18794095 ~ 18827675 (+) True G378306
TU448352 lncRNA downstream 190897 18799774 ~ 18834222 (+) False G378308
XM_034299917.1 mRNA upstream 52598 18382323 ~ 18549969 (+) True txndc11
XM_034300412.1 mRNA upstream 74971 18523161 ~ 18527596 (+) True LOC117596189
XM_034300406.1 mRNA upstream 97827 18498988 ~ 18504740 (+) True LOC113524839
XM_034300413.1 mRNA upstream 211917 18385927 ~ 18390650 (+) False LOC117596190
XM_034300415.1 mRNA upstream 211917 18386005 ~ 18390650 (+) False LOC117596190
XM_026911214.2 mRNA downstream 55210 18664087 ~ 18674601 (+) True sp6
XM_034300150.1 mRNA downstream 172309 18781186 ~ 18804485 (+) True LOC113525834
XM_034300153.1 mRNA downstream 337205 18946082 ~ 19021923 (+) True LOC113529661
XM_034300335.1 mRNA downstream 425634 19034511 ~ 19105679 (+) True LOC113524847
XM_034300336.1 mRNA downstream 425634 19034511 ~ 19105679 (+) False LOC113524847
TU448141 other upstream 53815 18543671 ~ 18548752 (+) False txndc11
TU448127 other upstream 106524 18494840 ~ 18496043 (+) True G378160
TU448033 other upstream 315257 18282994 ~ 18287310 (+) True G378105
trnak-uuu_20 other upstream 482830 18119665 ~ 18119737 (+) True trnak-uuu_20
TU447580 other upstream 533621 18062418 ~ 18068946 (+) False G377748
TU448343 other downstream 172161 18781038 ~ 18822056 (+) False LOC113525834
TU448412 other downstream 328623 18937500 ~ 18942328 (+) True G378354
TU448413 other downstream 329997 18938874 ~ 18942328 (+) False G378354
TU448417 other downstream 337238 18946115 ~ 18966157 (+) False LOC113529661
TU448438 other downstream 530928 19139805 ~ 19142137 (+) True G378376

Expression Profile