RNA id: XM_034300258.1


Basic Information

Item Value
RNA id XM_034300258.1
length 3467
RNA type mRNA
GC content 0.47
exon number 20
gene id cul4a
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6295380 ~ 6317459 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGGAATCTTTTGTGCAGACTTGGCAACCCTGCCTGATATACGGGCCATTTTGTTGTGGTGTTTGGGGGGGAAAATTAGCCGTTAACTATGAACATTGTGCACTTTTGCCTCGACACTGTGTGCTCTTTGGGTCAGATATTAAGCCAGAACGCTACATAAGGGTTGGCCGTTTGCGACAGGCGactgtttgtaattatttacactgtttacaggTTTGTTTTGACGCAGTTAGCTAGCTGCCGTGCTAactcagctagctggctaacttcAGCTGTAGTTCCTCTCGGCTTCAGCTCTTGTCATTAAGGGCTTCGAGCGCTGAAAGTTAGAAACACGCTGGAGTGTTTGCAGGGCGGGTCGCTGAAGGGCTGAAGAAGGCGTTCATTTCAGGGGGAAAACACAACAGCGACGGCTCGCTTTAGCcagcaaaagaacaaaaagttgGCTGTGAATGATGGCAGAGGAGTCCGGACAGAGCAAGAGCGCCGGTTTCTCGGCTCTGGTTGAGAACAGTAACGGAGTGACTAAAACCCCGAGCTCCAAATCCAGCACGTCCAAGAAACTGGTGATTAAAAACTTCAAAGaAAGACCCACGCTGACGGAAACCTACACCGAGGACACATGGCTGAAGTTGCGTGATGCCGTTGGTGCTATCCAGAACAGCACATCAATCAAATACAACTTGGAGGAGCTTTATCAGgctGTGGAAAATCTTTGCTCTTACAAGGTCTCGCCCATGTTATACAAACAACTCCGGCAAGTGTGTGAAGATCACGTGCGGGCTCAGATCCACCAGTTTAGAGAAGACTCTCTGGACAGTCTGTCTTTTTTGAAGAGGATGAACAGATGCTGGCAAGACCACTGCAGAcaaacaaTCATGATCCGTAGCATTTTCCTCTTTCTGGATCGCACATACGTCCTCCAGAACTCCCTTCTTCCCTCTATATGGGACACAGGGCTGGAGCTGTTTCGCACGCACATTGTGAGTGATGGTGCAGTCCAGAGTCGTACAGTAGAGGGAATCTTGGAGCAAATTGAACGAGAGAGGAATGGTGAGACTGTGGATCGGAGTCTCCTGCGCAGCTTACTAGGCATGCTCTCAGACCTACAGGTGTATAAGGAGTCTTTCGAAAACAGGTTTCTGATTGAGACGGATCGCTTGTATGCAGCTGAGGGTCAGAGACTGATGTTAGACAGAGATGTACCTGAATACCTGCACCATGTAGCACGGCGTCTAGAGGAGGAGAACGATCGTGTCATCAGTTACCTAGATCAGAGCACTCAGAAGCCCCTGATCTCTGCAGTAGAAAAGCAGCTTCTGGGTGAACATATGACTGCCATTTTACAGAAGGGTCTCAGTACACTGTTGGATGAGAACCGTGTTACTGAGCTGACTCTGCTCTACCAGCTCTTCAGCAAAGTGAAGGGAGGTCTGCCTGTATTACTGCAGTTCTGGAGAGAGTACATCAAGAACTTTGGTGGCGAGATTGTTGGCTCTCCTGAAAAAGACAAGGACATGGTGCAGGAACTGCTAGACTTTAAGGATAAAATGGACAACGTAGCGCACAGCTGCTTCCAGAGGAACGAGGGCTTCATCAATGCCATGAAGGAGGCCTTCGAGAGCTTCATTAACAAGAGACCCAACAAACCAGCAGAGCTTATTGCCAAATATGTAGACTCCAAACTACGCGCTGGTAACAAAGAGGCCACAGAAGAGGAGCTGGAGAGAATCCTTGACAAGATCATGATTATCTTCCGCTTTATCCACGGTAAAGACGTGTTTGAAGCGTTCTACAAAAAAGATCTAGCGAAGCGCTTGCTGGTGGGTAAAAGTGCCTCTGTGGATGCCGAGAAATCCATGCTGTCCAAACTCAAGCATGAGTGTGGTGCAGCATTCACCAGCAAGCTCGAGGGCATGTTCAAAGATATGGAACTTTCCAAAGACATTATGATCCAATTCAAACAGTACATGCAGAATCAGAGTGAACCCAGCAACATCGATCTGACAGTCAACATCCTCACCATGGGCTACTGGCCCACCTACACTCCCATGGATGTCCATCTGCCCTCTGAGATGGTAAAACTTCAGGAGGTGTTCAAAACGTTCTATCTCGGGAAGCACAGTGGGCGAAAGCTTCAGTGGCAGCCCACACTGGGCCATGCGGTGCTTAAAGCTGAGTTTAAGGAGGGTAAAAAGGAGCTGCAGGTATCTTTATTCCAGACACTTGTTCTGCTCATGTTTAATGAAGGGGAGGAGTTTACGCTAGAGGAGATACAAACAGCTACAGGAATAGAGGAGAGTGAGCTGAGACGCACACTGCAGTCCCTGGCGTGTGGGAAAGCTCGAGTACTTAATAAAAATCCCAGAGGGAAAGACGTGGAGGACGGAGACCGCTTCAACTTCAATAATGACTTCAAACATAAACTGTTCCGTATTAAAATCAACCAGATTCAGATGAAGGAGACGGTAGAGGAGCAGGTGAGCACCACAGAGCGGGTCTTCCAGGACAGGCAGTACCAGATAGATGCCGCAGTGGTGAGGATCATGAAGATGAGGAAGACTCTCAGCCACAACCTGCTGGTGTCAGAACTCTACAACCAGCTCAAGTTCCCTGTGAAGCCAGGTGACCTGAAGAAGCGCATCGAGTCCCTCATTGACCGAGACTACATggagagagacaaggagagcCCCAACCAGTATCATTATGTTGCCTGAGATCCAGTCCGGAGGCACAGGCACAGCCACTGATCTGAGATCTGCCCTTTACTCGGGCTGCATGCCCTAGGACAGCCTGTACCCCACCACCTTCGAGGACCCCGATTATGCCCGCCAGTAGAGTGACCAGGGTTGGCATGGGGCCTTACTGTACTTTAAAGTGGTGGGGTTAAAGTGTGACGTTAGGAGGATCGCACGAGGAGAATGATCAGCTGATGATTTCCACAAACAAgcactttgttttcttcttgcttttgttttttttgttgtttttttagttttgctttttGTGGTCAGTCTTCTCTTTTGATGTCTCTCACATGCGCTCATAGTTTAGTTCAATTTTTTTAGCTGTTCTGGCTGCTGACTTGTCAGATTTTGCTAGAGAATGGAGAGTGTGTTCAGTTATGAATAGCAGCAGGCTGTGTTAGCATCAGGGTTTTTGAGAAATTTCACTCAGGCTATGAAATGTTGATAAACCAAGCATTTTACTTGCAAAAGCTTcactaacacacagacacatacagcaAGATTGGATTCTATGACATGTTCTCTAGGTTTCACACACTGAAAAAGGctaaaatgagtgaaaaaatgttttttaagaCTCAACAAAGCAcattagtgtgtatgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtggatATCTGtgtgctagattttttttttcttctaattcaCCACTAAAAATATTCTGACCAACA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K10609 CUL4; cullin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439664 lncRNA downstream 290590 6001838 ~ 6004790 (-) True G371134
TU439665 lncRNA downstream 293767 6001179 ~ 6001613 (-) True G371135
TU439687 lncRNA downstream 295906 5998848 ~ 5999474 (-) True G371153
TU439686 lncRNA downstream 297221 5998003 ~ 5998159 (-) True G371152
TU439680 lncRNA downstream 300633 5993489 ~ 5994747 (-) True G371147
TU439992 lncRNA upstream 45095 6362554 ~ 6363151 (-) False LOC113537742
TU440057 lncRNA upstream 211938 6529397 ~ 6536004 (-) True G371454
TU440098 lncRNA upstream 246390 6563849 ~ 6566945 (-) True G371487
TU440232 lncRNA upstream 491034 6808493 ~ 6815071 (-) True G371595
TU440272 lncRNA upstream 550285 6867744 ~ 6867960 (-) True G371632
XM_026932227.2 mRNA downstream 2633 6279824 ~ 6292747 (-) True lamp1a
XM_026931930.2 mRNA downstream 56802 6226053 ~ 6238578 (-) True tmco3
XM_026931690.2 mRNA downstream 72825 6203697 ~ 6222555 (-) False tfdp1b
XM_026931691.2 mRNA downstream 72825 6203697 ~ 6222555 (-) True tfdp1b
XM_026932058.2 mRNA downstream 95200 6191628 ~ 6200180 (-) True grk1a
XM_034300224.1 mRNA upstream 9318 6326777 ~ 6330275 (-) True LOC117596162
XM_034300225.1 mRNA upstream 41180 6358639 ~ 6363203 (-) True LOC113537742
XM_026932064.2 mRNA upstream 46353 6363812 ~ 6380175 (-) False LOC113537543
XM_026932063.2 mRNA upstream 46353 6363812 ~ 6368888 (-) True LOC113537543
XM_026932065.2 mRNA upstream 54916 6372375 ~ 6378994 (-) True f7i
XR_004577328.1 other downstream 261987 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 343067 5942429 ~ 5952313 (-) False LOC113537623
XR_004577339.1 other downstream 748348 5534472 ~ 5547032 (-) False LOC113537235
XR_004577340.1 other downstream 748348 5536781 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other downstream 748349 5534415 ~ 5547031 (-) False LOC113537235
XR_004577329.1 other upstream 41180 6358639 ~ 6363203 (-) False LOC113537742
XR_004577289.1 other upstream 741376 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 741376 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 1400804 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 1595007 7912466 ~ 7916321 (-) False fam155a

Expression Profile