RNA id: XM_034300270.1


Basic Information

Item Value
RNA id XM_034300270.1
length 1887
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC113535651
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2261289 ~ 2271653 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTATAAGTTGGCAATGCATAGAGGAACATCTAATGTTTTAGGAAGGGTGAGAATGGAAAAGTCAGCCAAGTGCAAAAGGTGAGAAGAAGACCAAAAGCACACTTTACCAcaaactcacaacacacaccctgCGTGGAGTACATGACATACATGAGATATGGTTCGTCTCATGTCAGTGACCCTACTCTTCTCAGTATGTGGTATAGAGGCAAATATTCCTCATCGATATCACTTTGTGAATGAGAATAAAACCTGGAGTGAAGCTCAGACTTATTGCAGAGAGAAATACACTGATCTCGCCACCATCAACAACATGGAAGAGATGAAGAAGCTGAATCACACACTGAAGAAGGAAACTGCAGAGCAAGCTTGGATCGGTCTACAGAGAGAGGGCACTGGGGAATGGCAGTGGTCTCTGGCAGACCAAACTTTCTACAGAGACGGAGACACTTACAGAAACTGGAATAGTGGAGAACCAAACAATTGCAAGAAAAATGAGTTCTGTGTTTTCATGTCAGAAAGCAATGGTTTCTGGTTTGATGATCCGTGTAATAGAGCATTACCTTTTGTGTGTTATGAAGaaaagaacacaaacactaaTAGACACATATTAATTAATGAGGGAAAGAGCTGGTATGATGCTCAGACCTACTGCAGAGAGAAATACACTGATCTGGTCAGTGTGAGGAACCAAACTGAGAATGAGGAGATCTGGAGAGTGAGTCAAAATTCACCTAATGAAACTGTTTGGATTGGTCTGTTTAATGACGCCTGGAAGTGGTCAGATCAGAGTAATTCCTCATTCAGATACTGGAGCTCTGACAAACCCAGTGGAGGTTTGAACTGTGctgcagtgtctgtgtctgaGCAACACTACTGGAGTGATGTGGACTGCACAAAAACACTCCCATTCATCTGTCATGAGAataaactgatCCTGATTAAGGAGAATCTGACCTGGTGGGAAGCTCTGAATTACTGCAGGAACCATCATTACGACCTGGTCTCAGTGCGCACTGAGGAGATGCAGCTCTGGGTGAAGGAGGTGGTTCAGAACGCCTCCACTGAACACGTGTGGCTCGGCCTGCGTCACGACTGTGCCCAGCGTATCTGGTTCTGGGTTTTTGGATCAATGCTCTGCTATCAGGACTGGGCCCTGGGGTATGGGACCTGGAATGAAGACTGCAGCCATGAGAAGAGAAGCGGAGCAGTGCAGTCTGGAGTAGAGCAGCAGTGGATCGACCTGCCTGAGAGCTACAAACTCAACTTCATCTGCTCTACCTATGACGacatttttttgaTTAAACATGAAGACTGAAGACAAGCTGTGGTCCACCATCTGTATCCAGCATCAGCAGATCTACAGTACTGTCGTATTTATACTCTTCTATACATTATTGCTATAACGTATCCTCTTTATCCAGATGActcatcatatttttaatatggtATTCAGTGAATTCCACTGTCTCCATACAGCATGACCTTTTCATATTCCCAGTGTATGTTACATATATTATACTTGCTTTTCTTATTAAGAGAGGCTTTATGGGCAATTAAGGTGAAATCTATTTACTTGATTTTTATACTACAGTGTGTTTGGTATGCACATTGAATTGTTTTTCATATGCTTtctcagaatagggaaaaatatCATACTGAGCTACTTTACACCAGTGCAGGAAGTTTAAACAAATAGCCCTGCAAACaatgataaaatgttcattattcatAACAGTTATACAGGTGTCATGtgatacatttttattgttttgttgtttttttttctgttctcacACGTATGCCTTTTTACATGTGGATAAATAAGTTTGTTATTAAGATGTCCTTGCTTCTTAATGTGTAAGAATGTAGACTGTAATGACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577295.1 lncRNA downstream 16131 2199025 ~ 2245158 (-) True LOC117596129
XR_004577296.1 lncRNA downstream 16131 2244126 ~ 2245158 (-) False LOC117596129
XR_004577298.1 lncRNA downstream 73347 2186646 ~ 2187942 (-) False LOC117596130
XR_004577297.1 lncRNA downstream 73347 2186646 ~ 2187942 (-) True LOC117596130
XR_004577364.1 lncRNA downstream 116838 2115578 ~ 2144451 (-) True LOC117596194
XR_004577279.1 lncRNA upstream 71470 2343113 ~ 2345533 (-) False LOC113535806
XR_003403637.2 lncRNA upstream 71470 2343113 ~ 2345533 (-) True LOC113535806
TU438165 lncRNA upstream 239113 2510756 ~ 2510962 (-) True G369891
TU438184 lncRNA upstream 248855 2520498 ~ 2522127 (-) True G369907
TU438207 lncRNA upstream 284336 2555979 ~ 2558765 (-) True G369924
XM_034300285.1 mRNA downstream 2141 2256421 ~ 2259148 (-) True LOC117596168
XM_026929215.2 mRNA downstream 324214 1915663 ~ 1937075 (-) True klf7a
XM_034300371.1 mRNA downstream 353162 1895048 ~ 1908127 (-) False LOC113535707
XM_026929032.2 mRNA upstream 11148 2282791 ~ 2331670 (-) True LOC113535598
XM_026929274.2 mRNA upstream 75585 2347228 ~ 2350989 (-) True LOC113535761
XM_026928728.2 mRNA upstream 229387 2501030 ~ 2515018 (-) False LOC113535442
XM_034299960.1 mRNA upstream 229387 2501030 ~ 2512436 (-) True LOC113535442
XM_026928727.2 mRNA upstream 229387 2501030 ~ 2509139 (-) False LOC113535442
TU437816 other downstream 466065 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 661545 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 984476 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1345606 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 2034187 202654 ~ 227102 (-) True si:dkeyp-75b4.8
XR_003403632.2 other upstream 295114 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 571569 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 2185792 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 2187674 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 2189566 4461209 ~ 4461315 (-) True LOC117596197

Expression Profile