RNA id: XM_034300309.1


Basic Information

Item Value
RNA id XM_034300309.1
length 2650
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC113535753
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4488149 ~ 4504739 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCAAGGCGCGACACATGCGCGGGAGATGTGATTCACATCAGGTTCATCCCCCTGATACATGAAAGCTTTCCCGAACGGACATAACAGATGGGATGTAGATTGGGAGTTGTTTAATGGACAGTGAAAGATGGCAGACAGATCGGATTTGGTGAAGGCGCAGGGCAGGAGCAGCGCACAGCACCACAACGCCAAAGACACCTCACTGCGCCTCCGAGTTATCTTCTTAGACGAAAGCGAGCGAGTTTTCGAGGTCGAGCAAAAAATCCTGGGCTGTGACTTTTTCAacaaagtgtgtggacaccttaAGCTCCTGGAGAAAGAATACTTTGGCCTGGAATTCCGTCATCATAATGGCAACTATGTGTGGCTTGAACTTTTGAAACCACTggcaaaacaaatcaaaaACACCAGTGAACTGGCATTCCGTTTTATTGTGAAGTTTTTCCCACCAGACCCAGGCCAGCTGCAAAAAGGTTTGACCAGGTATCTATTTGCTCTGCAAATAAAACAGGATTTGTCAAATGGAAGCCTCACGTGTAATGACAACAGTGCTGCGCTGTTGGTCTCTCATATATTGCAGGCAGAAATTGGGGATTACAATGAAGAGTTGGATGCGCACCACCTAGAGAATAAGCAGTATGTGCCAAATCAGGAGTACCTGGACCACAAGATTATTCGCTTTCATAAGAAACACAGAGGTCACACTCCAGCCATGTCAGATGTGCATTTGTTGGAGGTTGCCCGGAAATTGGATATGTATGGTATTCGACCACATCCTGCTCATGATGGAGAAGGCATGCGGATCAATCTGGCTGTTACCCACATGGGTGTACTGGTATTTCAGGGTAACACAAAAATCAATACCTTCAGCTGGGCCAAGATCCGCAAATTGAGTTTCAAGAGGAGGAATTTCCTTATCAAACTACACACAGAGGCTGGGCCTTCACGGAGGGACATGGTTGAGTTCACCATGGCAAGCAGAGATATTTGTAAAACTTTCTGGAAGATGTGTGTGGAGTATCATGCCTTCTTCCGTCTAGCTGAGGAGCCCAAGCCATATCAAAAGTCACTGTTTTCCAGCAAGGGATCCAGGTTCAGATACAGTGGCAGGACACAAAAGCAACTCCTAGAGTGTGTTGGCACTGGCGAATACAAACATCTACCATTTGAGAGGTCAAACTGCAAGCTTGCCCATGAATCTCGGCAATGCAAGTCGTCCCCAGATTTGCTCACTGATGTATCCAAACAGCTTTACGAGCAAGCCAATCAATTGTCCCACCTTGATGTTTCAAAGCATGGCACAAATGTATTTGCTGAGGGGCTTTACCGGTCCTGTCCCTTGTCAAGACTGCCTGCCAAATCAAGCAGGGTTGCATCACCAAAACCACGTTCCATGTCCACATCAGGGGCAGAGCGTCAAGGCAGAAGCTCCCAAAGACCTGGGGCAAGGAGACATCAGTCCCCTAGCTCTCAGCACCTGGTCCTTCTCTATCCCAACAGCCCCCACCTGCAATTCCATCCAGTGCTGCCAACTTTCCCACTTGCAACTTACCCTTTTTTGCTACAAGACTCCACATCATCTTCCTTAGACCGTCTCACACAAGCTCACCAGAATTTTAAGCCTATGAAGTATTTGACTAGGCAAACAGGCCACTCCTGTTCACCTGCTTCGTCTTTGTCACCGCCACAACGGCAGCAGCATCTGGAAAGGCTTCAACTCTCTGGAATTGGATTGGCTGAATCTAGACTGTGCCCCCTATCAGGAGGACCACTGGGGCTTGGGTTAAACAGAAGGCACAACATTGGAAAACTAGAAGCAGGGCACTACAGTGATGACTCTTCCTTTCAGAGTGCATTACCTTGCCGAGCCTCAAGCCAACCAGATGTGAAGTTCCAGAGATCTGCACTAGCTTCTTCAGCTGCTGCATATGCTTCAGAGTATCGGCCTCTGGGGTATTATCCCCACCTGTCACAACACCGGGTCCCTACTAGGCCAACCTACCTTCCACTAAGCCCTGCCCCTTTGCCAGAGAGACCCACATCTTTATGTGTGCTCGGCACAGGCAGTTACAGTGATTCAGACTCTGAACTCTTTTATCCATGTTACTGTCCTGCTGTAGGGAAAGTGGTACATTCTGGTCCACTAGCGCGTATGCGTTTCTCATCTGGAAGCCTTCAGCTAGATGAGgaagagggagaagaggaggaagaggatgacATGTGCAACCAGAGTGATGGGGAAAATACTGCTCTTACCTCTGTCAAGGACTATAAAGATTACTGAGAATGGCAATGCTTTTCAAGATTCCCACCTTCTCCTTTGATAGCTGTCATAAATCAGTGGGATCAGTATGGGTGAAGCATGACTATAGGTGCTGTAGTTGCTTTTCTTCTGGAAGCGATCCTGTCCCTGTTTCTGACTAGAAGGACCTAAAAAAAGAGTCATGGAATCTGGAGCAGCCAGGAGCATAGAGACTGTGGGAATCATGACAATAACTACATCAGGACCTGgagcacagacagacaaaggGAGAGAGGAAACACAAGGAGCTACATCTAAAccaccacatcaggttccatttAAGTTGGAATCATGACTGGAAGTCACGAACTTGGGTGACAGAAGAGTGGAACCAGGAAACAAGCATG

Function

GO: NA

KEGG:

id description
K23971 FRMD7; FERM domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438835 lncRNA downstream 41043 4446458 ~ 4447106 (-) True G370468
TU438789 lncRNA downstream 346021 4141922 ~ 4142128 (-) True G370425
TU438781 lncRNA downstream 501527 3986205 ~ 3986622 (-) True G370418
TU438779 lncRNA downstream 504570 3983111 ~ 3983579 (-) True G370416
TU438778 lncRNA downstream 505209 3981710 ~ 3982940 (-) True G370415
TU439062 lncRNA upstream 300141 4804880 ~ 4811748 (-) True G370665
TU439059 lncRNA upstream 391488 4896227 ~ 4914035 (-) True G370663
TU439109 lncRNA upstream 541301 5046040 ~ 5046246 (-) True G370699
TU439112 lncRNA upstream 554114 5058853 ~ 5059054 (-) True G370702
TU439117 lncRNA upstream 557405 5062144 ~ 5062436 (-) True G370705
XM_034299954.1 mRNA downstream 870029 3611719 ~ 3618120 (-) True LOC113535432
XM_026928713.2 mRNA downstream 871257 3611719 ~ 3616892 (-) False LOC113535432
XM_026928711.2 mRNA downstream 1317664 3083070 ~ 3170485 (-) True gpc5a
XM_034300420.1 mRNA downstream 1596064 2874908 ~ 2892085 (-) True LOC117596192
XM_026928791.2 mRNA downstream 1649360 2833613 ~ 2838789 (-) True LOC113535482
XM_026928684.2 mRNA upstream 6531 4511270 ~ 4517988 (-) True cnpy3
XM_026929209.2 mRNA upstream 91691 4596430 ~ 4618808 (-) False cfap221
XM_026929207.2 mRNA upstream 91691 4596430 ~ 4618808 (-) False cfap221
XM_026929211.2 mRNA upstream 91691 4596430 ~ 4618297 (-) False cfap221
XM_026929208.2 mRNA upstream 91691 4596430 ~ 4618296 (-) True cfap221
XR_004577367.1 other downstream 24935 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 26834 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 28726 4459317 ~ 4459423 (-) True LOC117596196
XR_003403643.2 other downstream 30608 4457435 ~ 4457541 (-) True LOC113535829
TU438365 other downstream 1634938 2843212 ~ 2853211 (-) True LOC117596167
XR_004577360.1 other upstream 19763 4524502 ~ 4524784 (-) True LOC117596183
TU439054 other upstream 338590 4843329 ~ 4889381 (-) True G370658
XR_004577341.1 other upstream 1029676 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 1029676 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 1029676 5534415 ~ 5547032 (-) False LOC113537235

Expression Profile